Pinned Repositories
qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
q2view
A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
onecodex
Command line interface and Python client library for the One Codex API
Keemei
Validate tabular bioinformatics file formats in Google Sheets
q2cli
Command line interface for QIIME 2
qiime2
Official repository for the QIIME 2 framework.
scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
jairideout's Repositories
jairideout/astropy
Repository for the Astropy core package
jairideout/caporaso-lab.github.io
Lab website
jairideout/cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
jairideout/data.qiime2.org
jairideout/datadogpy
The Datadog Python library
jairideout/docs
Source repository for https://docs.qiime2.org
jairideout/ISIS3
Integrated Software for Imagers and Spectrometers v3. ISIS3 is a digital image processing software package to manipulate imagery collected by current and past NASA and International planetary missions.
jairideout/Keemei
Validate bioinformatics metadata in Google Sheets
jairideout/onecodex
Command line interface and Python client library for the One Codex API
jairideout/openlibrary
One webpage for every book ever published!
jairideout/pytest
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
jairideout/q2-composition
QIIME2 plugin for compositional data analysis
jairideout/q2-cutadapt
jairideout/q2-demux
Map sequence barcodes to sample identifiers.
jairideout/q2-diversity
jairideout/q2-feature-table
Official QIIME 2 plugin supporting normalization of sample by feature tables.
jairideout/q2-longitudinal
QIIME2 plugin for paired sample comparisons
jairideout/q2-metadata
jairideout/q2-quality-control
A QIIME 2 plugin for quality control of sequence and feature data
jairideout/q2-quality-filter
Quality filtering for QIIME2
jairideout/q2-sample-classifier
QIIME2 plugin for machine learning prediction of sample data.
jairideout/q2-taxa
jairideout/q2-vsearch
vsearch plugin for QIIME 2
jairideout/q2cli
Command line interface for QIIME 2
jairideout/q2studio
A web interface for QIIME 2
jairideout/qiime2
It has begun...
jairideout/scipy
Scipy library main repository
jairideout/sparse
Sparse multi-dimensional arrays for the PyData ecosystem
jairideout/sphinx-automodapi
Sphinx extension for generating API documentation
jairideout/sunpy
SunPy - Python for Solar Physics