janelia-cellmap/dacapo

Issues

• Momey leak

  #349 opened a month ago by mzouink
  12

• Creating a Run from a config doesn't work unless retrieved from store

  #61 opened a month ago by davidackerman
  2

• AttributeError: 'CNNectomeUNet' object has no attribute 'dims'

  #331 opened a month ago by mzouink
  3

• [I2K workshop] Installation errors for DaCapo on Windows 10, saying Microsoft Visual C++ is required

  #313 opened 2 months ago by AJFSalomon
  2

• after using funlib.persistence 0.5.3 multiprocess lambda error

  #326 opened a month ago by mzouink
  3

• publish in pypi and conda

  #29 opened a month ago by mzouink
  0

• MPS op not available

  #323 opened a month ago by mzouink
  1

• Distance Transforms

  #316 opened 2 months ago by pattonw
  0

• Multiprocessing error during validation in LocalTorch compute context

  #298 opened 3 months ago by atc3
  3

• Non-integer inputs in DataSplitGenerator

  #296 opened 3 months ago by atc3
  0

• Newest funlib.persistence>=0.5 has breaking changes

  #288 opened 3 months ago by davidackerman
  1

• Create sample dataset

  #72 opened 10 months ago by davidackerman
  18

• training post validation bug

  #261 opened 7 months ago by mzouink
  0

• allow channel splitting in `run_blockwise`

  #260 opened 7 months ago by neptunes5thmoon
  0

• Bug in validation

  #259 opened 7 months ago by mzouink
  1

• publish to pip and conda

  #62 opened 8 months ago by d-v-b
  9

• Include pretrained weights in repo[examples]

  #96 opened 8 months ago by rhoadesScholar
  2

• Teaching notebooks

  #66 opened 9 months ago by mzouink
  1

• Documentation corrections required

  #58 opened 9 months ago by davidackerman
  4

• Starter Generator using CellMap-Models

  #164 opened 9 months ago by mzouink
  3

• Docstrings for HotDistance and InnerDistance, etc.

  #94 opened 9 months ago by rhoadesScholar
  0

• Add tests

  #133 opened 9 months ago by rhoadesScholar
  1

• issue templates

  #95 opened 9 months ago by cmalinmayor
  1

• Add codecov, pre-commit, etc

  #73 opened 10 months ago by cmalinmayor
  0

• Update README.md

  #78 opened 9 months ago by cmalinmayor
  1

• Installation and test issues

  #59 opened 9 months ago by davidackerman
  3

• Include delete options for stores

  #127 opened 9 months ago by davidackerman
  1

• Pull ComputeContext defaults from dacapo.yaml

  #69 opened 10 months ago by rhoadesScholar
  0

• Make default deployment not require MongoDB

  #56 opened 10 months ago by rhoadesScholar
  2

• Validation

  #145 opened 10 months ago by rhoadesScholar
  2

• Parallel blockwise processing

  #57 opened 10 months ago by rhoadesScholar
  5

• Incorporate insights from Cellpose/Carsen

  #28 opened 10 months ago by rhoadesScholar
  1

• Gaussian Noise Augmentation

  #24 opened 10 months ago by mzouink
  0

• stores don't work

  #129 opened 10 months ago by davidackerman
  1

• In examples, want to specify path to config store within the notebook

  #108 opened 10 months ago by davidackerman
  1

• Add contributor docs

  #79 opened 10 months ago by cmalinmayor
  0

• Make `predict` consistent between internal and CLI dacapo

  #115 opened 10 months ago by adjavon
  2

• Docs build failing

  #81 opened 10 months ago by cmalinmayor
  2

• Add Security-Bot

  #102 opened 10 months ago by rhoadesScholar
  2

• Resampling should be configured when constructing batch providers, not in array configs

  #97 opened 10 months ago by rhoadesScholar
  5

• Simplify ArrayConfig declarations

  #93 opened 10 months ago by rhoadesScholar
  0

• Check and improve test coverage

  #82 opened 10 months ago by adjavon
  0

• Target resolution should be specified by Task config

  #67 opened 10 months ago by rhoadesScholar
  2

• Finish Apply.py

  #44 opened 10 months ago by mzouink
  3

• Configurations from YAMLs

  #65 opened 10 months ago by rhoadesScholar
  1

• fails to install lsds package on mac

  #41 opened 10 months ago by davidackerman
  1

• Pytest 8.0.0 not working

  #48 opened 10 months ago by mzouink
  1

• parallelize validation pipeline

  #38 opened 10 months ago by davidackerman
  2

• Optimizer should be set up with a config (like augmentations)

  #50 opened 10 months ago by rhoadesScholar
  0

• fix tests when committing

  #40 opened 10 months ago by davidackerman
  1