jbloomlab/IFNsorted_flu_single_cell
single-cell sequencing of flu infected cells enriched for IFN+ ones
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Issues
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GTF file start/end?
#27 opened by twfs - 1
association of viral load with IFN in NS1-mutants
#25 opened by jbloom - 2
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clarify heterogeneity in Figure 6
#21 opened by jbloom - 2
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emphasize how gene absence is called
#24 opened by jbloom - 2
why is NP absence uncommon?
#20 opened by jbloom - 2
Explain why cells filtered on total UMI counts
#23 opened by jbloom - 1
clarify key to boxes in Figure 4
#22 opened by jbloom - 2
clarify colors in Figure 4
#19 opened by jbloom - 1
check that both viral barcodes are in IFN+ cells
#17 opened by jbloom - 0
Mutant viruses for IFN induction measurements
#16 opened by jbloom - 1
upload data to GEO
#9 opened by jbloom - 1
text for first five sections of Results
#10 opened by jbloom - 1
list of key references for intro / discussion
#15 opened by jbloom - 0
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Figure 1C: percent IFN+
#1 opened by jbloom - 1
IFN reporter section of Methods
#11 opened by jbloom - 1
Single-cell viral stocks section of Methods
#12 opened by jbloom - 1
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Figure 2A: schematic of experimental approach
#2 opened by jbloom - 1
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Minor fluorescence labeling issue
#8 opened by abr28 - 1
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Supplements relevant to Figure 3
#4 opened by jbloom - 1
Figure 2B: some summary stats from single-cell
#3 opened by jbloom