Pinned Repositories
counterfactualms
counterfactuals for magnetic resonance images of multiple sclerosis
intensity-normalization
normalize the intensities of various MR image modalities
lesion-metrics
metrics for evaluating lesion segmentations
niftidataset
pytorch dataset class for reading and transforming NIfTI files
pymedio
read arbitrary medical image formats with python
pyrobex
python bindings for ROBEX brain extraction
selfsupervised3d
methods to support self-supervised learning with 3D images
synthtorch
deep neural network-based image translation/synthesis
tiramisu-brulee
A 2D and 3D PyTorch implementation of the Tiramisu CNN
jcreinhold's Repositories
jcreinhold/intensity-normalization
normalize the intensities of various MR image modalities
jcreinhold/niftidataset
pytorch dataset class for reading and transforming NIfTI files
jcreinhold/synthtorch
deep neural network-based image translation/synthesis
jcreinhold/counterfactualms
counterfactuals for magnetic resonance images of multiple sclerosis
jcreinhold/selfsupervised3d
methods to support self-supervised learning with 3D images
jcreinhold/pymedio
read arbitrary medical image formats with python
jcreinhold/tiramisu-brulee
A 2D and 3D PyTorch implementation of the Tiramisu CNN
jcreinhold/pyrobex
python bindings for ROBEX brain extraction
jcreinhold/uncertaintorch
uncertainty-based synthesis and segmentation in pytorch
jcreinhold/lesion-metrics
metrics for evaluating lesion segmentations
jcreinhold/annom
anomaly detection support for synthesis in pytorch
jcreinhold/lesionqc
calculate quality metrics for lesion segmentation results
jcreinhold/msseg
Multiple sclerosis T2 lesion segmentation
jcreinhold/replica
synthesize MR brain images via a random forest
jcreinhold/synthit
an amalgam of (non-DNN-based) MR brain synthesis routines
jcreinhold/cookiecutter-pypackage
Cookiecutter template for a Python package.
jcreinhold/dicom-numpy
Properly generate a 3D numpy array from a set of DICOM files.
jcreinhold/dotfiles
jcreinhold/EconML
jcreinhold/jcreinhold
jcreinhold/jcreinhold.github.io
jcreinhold/nimanifold
nonlinear dimensionality reduction exploration for medical image datasets
jcreinhold/niwidgets
Neuroimaging widgets for jupyter notebooks
jcreinhold/numpy
The fundamental package for scientific computing with Python.
jcreinhold/owl
Owl - OCaml Scientific Computing @ http://ocaml.xyz
jcreinhold/OwlPPL
Final Year Project - A probabilisitic programming language in OCaml
jcreinhold/synthqc
quality analysis/control for synthesis
jcreinhold/torchio
TorchIO: medical imaging for deep learning.