jcreinhold/intensity-normalization

Issues

• Skfuzzy dependency breaks compatibility with Python 3.12

  #82 opened 2 months ago by jcreinhold
  0

• error when importing

  #81 opened 2 months ago by aaisha-bah
  4

• Using normalization methods -- bash

  #80 opened 9 months ago by johnpp4
  1

• Fix histogram plotting when passing in a tissue mask in FCM normalizer

  #79 opened 9 months ago by jcreinhold
  0

• "TypeError: Axis must be specified when shapes of a and weights differ." in the LSQ method

  #59 opened 2 years ago by Siji-chl
  0

• Add/check Python v3.10 support

  #42 opened a year ago by jcreinhold
  3

• request for tutorial of Z score

  #68 opened 2 years ago by yangwei1993
  9

• Update docs in the style of Diátaxis

  #74 opened 2 years ago by jcreinhold
  0

• Out-of-memory error in Nyul for large amounts of data

  #57 opened 2 years ago by sulaimanvesal
  4

• problems when importing the API

  #61 opened 2 years ago by DrChenziyan
  1

• `intensity-normalization` not working in Google Colab

  #58 opened 2 years ago by EngSema
  1

• What is the "MD" modality? And other questions.

  #55 opened 2 years ago by Siji-chl
  14

• Improve docs

  #37 opened 3 years ago by jcreinhold
  3

• Add option to specify output file type

  #54 opened 2 years ago by jcreinhold
  0

• Verify correctness of update to use pymedio

  #49 opened 2 years ago by jcreinhold
  1

• Support more image types in CLI (e.g., DICOM)

  #34 opened 2 years ago by jcreinhold
  5

• Fix mypy issues in update to use pymedio

  #50 opened 2 years ago by jcreinhold
  2

• Add pre-commit hooks

  #52 opened 2 years ago by jcreinhold
  1

• Add note about scanner gain in MR pulse sequence equations

  #51 opened 2 years ago by jcreinhold
  0

• Add numpy mypy plugin

  #47 opened 2 years ago by jcreinhold
  1

• Improve unit tests

  #48 opened 2 years ago by jcreinhold
  1

• Improve contributing information

  #46 opened 2 years ago by jcreinhold
  0

• Add a citation file

  #44 opened 2 years ago by jcreinhold
  0

• Nyul normalize not working with custom output range

  #39 opened 3 years ago by MLRadfys
  11

• Allow CSV input to CLIs

  #35 opened 3 years ago by jcreinhold
  1

• Confusing import errors for some CLI tools when ANTsPy isn't installed

  #40 opened 3 years ago by bcdarwin
  5

• Support printing version information

  #41 opened 3 years ago by bcdarwin
  1

• Njul histogram matching

  #38 opened 3 years ago by MLRadfys
  2

• Output and input distribution file in Sample-based normalization methods

  #36 opened 3 years ago by wjtan99
  2

• make `brain_mask` argument optional

  #30 opened 3 years ago by function2-llx
  2

• Refactor

  #24 opened 3 years ago by jcreinhold
  6

• Add option to output tissue maps in LSQ normalization

  #16 opened 3 years ago by jcreinhold
  1

• python functions

  #33 opened 3 years ago by giemmecci
  5

• Add PyTorch/Tensorflow interface

  #28 opened 3 years ago by jcreinhold
  1

• Add support for BIDS-structured projects

  #29 opened 3 years ago by jcreinhold
  1

• Solve normal equations with better numerical method

  #11 opened 3 years ago by jcreinhold
  1

• Add a conda recipe

  #31 opened 3 years ago by sarthakpati
  5

• No documentation for brain_mask in intensity_normalization.normalize.fcm.find_tissue_mask

  #26 opened 4 years ago by goyal-aman
  3

• Segmentation fault (core dumped)

  #25 opened 4 years ago by zzz123xyz
  9

• Error in imported nyul_normalize

  #22 opened 4 years ago by AdamKMeller
  2

• fcn-normalize command line problem

  #21 opened 4 years ago by 1alebra2
  1

• T2 normalisation

  #20 opened 4 years ago by 1alebra2
  1

• Incorrect coregister for label mri

  #19 opened 4 years ago by LarisaKozhekina
  1

• Coregister of mri and label (label register is not good)

  #18 opened 4 years ago by LarisaKozhekina
  1

• Is that possible to record the transformation in the co-registration function ?

  #15 opened 5 years ago by zzz123xyz
  2

• How to create the WM mask

  #14 opened 5 years ago by zzz123xyz
  1

• antspy need to be installed separately use --user in pip3 install if you don't have sudo authority

  #13 opened 5 years ago by zzz123xyz
  2

• Supply control CSF mask to ravel-normalize

  #10 opened 5 years ago by jimcost
  6

• Memory error using `ravel-normalize`

  #9 opened 5 years ago by jimcost
  39

• Path issue in command line execution

  #8 opened 5 years ago by jimcost
  11