jdreyf

jdreyf's Stars

• SimplifyJobs/Summer2024-Internships

  Collection of Summer 2024 tech internships!

  30.7k1.3k2.1k2.6k

• sib-swiss/training-collection

  Collection of bioinformatics training materials

  Language:Python9404268181

• cafferychen777/ggpicrust2

  Make Picrust2 Output Analysis and Visualization Easier

  Language:R9029411

• zwdzwd/sesame

  🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

  Language:R53713529

• openproblems-bio/openproblems-v2

  Formalizing and benchmarking open problems in single-cell genomics

  Language:Python4949818

• wangshisheng/NAguideR

  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses

  Language:R393

• WinVector/addinexamplesWV

  Ad-ins and keyboard shortcuts for building calculation pipelines in R

  Language:R32609

• datapplab/SBGNview

  Language:R248

• kpj/rwrap

  Seamlessly integrate R packages into Python.

  Language:Python21301

• irinagain/iglu

  R package for Interpreting GLUcose data from CGMs (Continuous Glucose Monitors)

  Language:R2021423

• WandeRum/GSimp

  GSimp is a Gibbs sampler-based missing value imputation approach

  Language:R193810

• PoolLab/ReferenceEnhancer

  Language:R17375

• praneet1988/Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ

  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.

  Language:Python14225

• SGDDNB/translational_regulation

  Detection of differential translated genes using Ribo-seq

  Language:R123811

• thepanlab/Seq2MAG

  Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)

  Language:Python72

• achilleasNP/IlluminaHumanMethylationEPICanno.ilm10b5.hg38

  Illumina Human Methylation EPIC annotation to use with IlluminaHumanMethylationEPICB5manifest and minfi

  Language:R5126

• jake-westfall/crossedpower

  R code for the Shiny app that accompanies Westfall, Kenny, & Judd (2014)

  Language:R50

• zhonghualiu/DACT

  Testing for mediation effects in genome-wide epigenetic studies

  Language:R52

• cran/cgmanalysis

  :exclamation: This is a read-only mirror of the CRAN R package repository. cgmanalysis — Clean and Analyze Continuous Glucose Monitor Data

  Language:R41

• IJaljuli/metarep

  meta-analysis with replicability-analysis

  Language:R41

• Stefanos-Apostle/SeSAMeStr

  Automated Pipeline to run SeSAMe Analysis on MM285 Methylation Array

  Language:R31

• biobakery/maaslin2_benchmark

  Large-scale Benchmarking of Microbial Multivariable Association Methods

  Language:R280

• cran/rGV

  :exclamation: This is a read-only mirror of the CRAN R package repository. rGV — Analysis of Continuous Glucose Monitor Data

  Language:R2

• pheno-ai/pheno-utils

  Pheno data utils - viz, loaders, mergers

  Language:Jupyter Notebook2

• shay-y/repfdr

  Replicability Analysis for Multiple Studies of High Dimension. Development continues at :

  Language:R2303

• IJaljuli/r-value

  Supplementary Material for "Quantifying replicability and consistency in systematic reviews" [submitted]

  Language:R1

• jingshuw/adaFilter

  Language:R1303

• mszimmermann/diet_microbiota_host_git_model

  Disentangling diet-microbiota-host contributions to the host metabolic phenotype

  Language:Jupyter Notebook1

• shay-y/radjust

  radjust: Replicability Adjusted p-values for Two Independent Studies with Multiple Endpoints

  Language:R1201

• veradjordjilovic/screenMin

  R code to accompany Djordjilovic et al. (2019)

  Language:R11