Pinned Repositories
AMICO_container
Signularity container for AMICO NODDI
baracus
cognitive_domains
connectivity
tools for connectivity analysis
FSL_FIX
FMRIB's ICA-based Xnoiseifier
LC_Marking
PupAlz
Code for the PupAlz study
pupil_AX-CPT
pupillometry
Scripts to process pupillometry data
jelman's Repositories
jelman/FSL_FIX
FMRIB's ICA-based Xnoiseifier
jelman/connectivity
tools for connectivity analysis
jelman/LC_Marking
jelman/PupAlz
Code for the PupAlz study
jelman/pupil_AX-CPT
jelman/pupillometry
Scripts to process pupillometry data
jelman/AMICO_container
Signularity container for AMICO NODDI
jelman/baracus
jelman/cognitive_domains
jelman/CognitiveDomains_PracEffecAdj
Create VETSA cognitive domains from practice effect corrected data
jelman/DST
Hold various processing and analysis scripts for the DST project
jelman/fslnets
python wrap of fslnets
jelman/GIFT_analysis
Set of scripts to operate on GIFT output
jelman/lakcluster_c
jelman/MetaXcan
MetaXcan software and manuscript
jelman/misc
misc functions and scripts
jelman/pathwayPRS_paper
Code used in the manuscript investigating associations between pathway-specific PRS and ATN biomarkers
jelman/pe_manuscript
Practice effects manuscript
jelman/PE_MCI_VETSA3
Code to generate practice effect corrected data for VETSA 3 MCI diagnosis
jelman/pna-notebooks
Notebooks for the Berkeley course on practical neuroimaging
jelman/pna-utils
Utilities for practical neuroimaging analysis class
jelman/practice_effects_VETSA
jelman/pupil_RT
jelman/roi_connectivity
Basic functional connectivity on ROI timecourses
jelman/rsfmri_pib
Misc scripts from study examining relationship between PIB and rs-fmri
jelman/SKM_cluster
scripts to run sparse k-means clustering with resampling in order to create PIB+ and PIB- groups
jelman/TwinModels
jelman/vetsa2bids
Scripts to convert VETSA MRI data to BIDS format
jelman/vetsa_pupillometry
Pupillometry scripts for VETSA project
jelman/voxelwise_pib
Set of scripts to incorporate voxelwise pib data into FSL processing stream