jfjlaros/demultiplex

Issues

• tags 5' and 3' in two different files usage

  #19 opened 4 years ago by iadamo1
  1

• Parallel processing with multiple cores

  #13 opened 4 years ago by lokeshbio
  5

• Demultiplex cannot separate read-pairs by R1 barcode and R2 barcode simultaneously if at least either of the two is found

  #32 opened 8 months ago by mmokrejs
  10

• Demultiplex with i7 index on dual index FASTQ

  #34 opened 10 months ago by agos316
  2

• Demultiplex v1.2.2 misses barcodes starting with a (series of) DELetions aka supposedly incompletely amplified PCR products

  #33 opened 10 months ago by mmokrejs
  11

• Does this tool works for Cell hashing data generated for cell ranger multi?

  #31 opened a year ago by bk11-lab
  3

• Does demultiplex pick up where it left off?

  #30 opened a year ago by jzehnpfennig
  1

• pairwise2.py doesn't work. Biopython deprecated it.

  #29 opened 2 years ago by Yyeserin
  4

• demultiplex unknown results

  #28 opened 2 years ago by seven1112233
  4

• Is it possible for the barcode to contain non-ATCG characters?

  #27 opened 2 years ago by vivian9909
  1

• All reads go into unknown

  #26 opened 2 years ago by Phagee
  4

• Dual barcodes with match

  #21 opened 3 years ago by caonetto
  3

• demultiplexing illumina with forward and reverse tag

  #22 opened 3 years ago by iadamo1
  1

• positions for barcodes do not work at all!

  #23 opened 3 years ago by antonkulaga
  1

• Degenerated constructs

  #24 opened 3 years ago by iquasere
  5

• Does demultiplex support hamming distance?

  #25 opened 3 years ago by iquasere
  1

• demultiplex match outputs all input reads to each barcode

  #16 opened 4 years ago by callumparr
  3

• Paired end support for match.

  #20 opened 3 years ago by Averstic
  2

• dual indexes.

  #1 opened 6 years ago by raw937
  6

• Demultiplexing not working?

  #4 opened 5 years ago by ViriatoII
  4

• All reads categorized as UNKNOWN

  #6 opened 5 years ago by wenweixiong
  14

• All reads go to UNKNOWN

  #8 opened 5 years ago by majogomezhughes
  6

• Working with compressed or piped files

  #12 opened 4 years ago by bulksoil
  2

• Cannot demultiplex based on barcode in header

  #14 opened 4 years ago by RominaAugustin
  10

• dealing with conflicts

  #17 opened 4 years ago by callumparr
  5

• anaconda2 errors

  #2 opened 6 years ago by raw937
  2

• Biopython Warning

  #3 opened 5 years ago by nr0cinu
  2

• can't run demultiplex with SyntaxError

  #5 opened 5 years ago by AstreChen
  1

• demultiplex: error: invalid barcodes file format

  #7 opened 5 years ago by majogomezhughes
  8

• Where is the barcode ?

  #9 opened 4 years ago by dridk
  1

• Is there an option to trim the barcode after the split?

  #10 opened 4 years ago by rgranit
  2

• How does one set the mismatch, deletion settings?

  #11 opened 4 years ago by rgranit
  4

• Output

  #18 opened 4 years ago by Kevin-Brockers
  12

• Issue deleted

  #15 opened 4 years ago by Emily072020
  0