jieegao

jieegao's Stars

• CompVis/latent-diffusion

  High-Resolution Image Synthesis with Latent Diffusion Models

  Language:Jupyter Notebook11.9k963461.5k

• artidoro/qlora

  QLoRA: Efficient Finetuning of Quantized LLMs

  Language:Jupyter Notebook10.1k85248823

• RosettaCommons/RFdiffusion

  Code for running RFdiffusion

  Language:Python1.8k42202344

• yang-song/score_sde

  Official code for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)

  Language:Jupyter Notebook1.5k1925205

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.5k1161174

• PaddlePaddle/PaddleHelix

  Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

  Language:Python1k25119225

• HazyResearch/hgcn

  Hyperbolic Graph Convolutional Networks in PyTorch.

  Language:Python6002648109

• lululxvi/deeponet

  Learning nonlinear operators via DeepONet

  Language:Python5381542145

• Graylab/IgFold

  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

  Language:Python328126661

• flatironinstitute/DeepFRI

  Deep functional residue identification

  Language:Python302104477

• VSehwag/minimal-diffusion

  A minimal yet resourceful implementation of diffusion models (along with pretrained models + synthetic images for nine datasets)

  Language:Python2574739

• octavian-ganea/equidock_public

  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

  Language:Roff23282358

• rifdock/rifdock

  Rifdock Library for Conformational Search

  Language:C++14284640

• wengong-jin/RefineGNN

  Language:Python1265523

• Kuhlman-Lab/ThermoMPNN

  GNN trained to predict changes in thermodynamic stability for protein point mutants

  Language:Python12502319

• HeliXonProtein/binding-ddg-predictor

  open source repository

  Language:Python12471027

• wengong-jin/abdockgen

  Language:Python10521123

• lucidrains/ddpm-ipa-protein-generation

  Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models"

  Language:Python861118

• Kortemme-Lab/flex_ddG_tutorial

  Language:Python8143229

• piercelab/antibody_benchmark

  Antibody-Antigen Docking and Affinity Benchmark

  Language:Perl663212

• zchwang/DeepRMSD-Vina_Optimization

  DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.

  Language:Python372610

• genedisco/genedisco

  GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.

  Language:Python362712

• automl/ProbTransformer

  Probabilistic Transformer: Modelling Ambiguities and Distributions for RNA Folding and Molecule Design

  Language:Python17924

• jianglikun/DeepTTC

  DeepTTC: a transformer-based model for predicting cancer drug response

  Language:Python14338

• Odinidoer/Annotation_GO.KEGG.COG

  整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集

  12215

• hetgnn/hetGTNet

  This repository contains the codes and data to replicate the experimental results in the manuscript Heterogeneous Graph Tree Networks.

  Language:Jupyter Notebook9111

• filippocastelli/KEGGutils

  Utils for working with KEGG data on NetworkX

  Language:Jupyter Notebook7376

• datduong/EncodeGeneOntology

  Encoder for Gene Ontology terms from their definitions or positions on the GO tree

  Language:Python6112

• ELIXIR-IIB-training/SysBiol2015

  Materials for the Protein Networks and Systems Biology course 2015

  4204

• jieegao/picture_style_trans

  This is a project about style transfer of a image using deep learning technology.

  Language:Jupyter Notebook2000