jlchen5

PhD student in Leiden University, majoring in bioinformatics. Welcome join @X-Omics1

Leiden UniversityNetherlands

Pinned Repositories

CELR-D-22-00015
Repository that contains the analysis from Li et al. Cell Regeneration, 2022.
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CSU-thesis-endnote
endnote style of CSU thesis
11
Deep-Learning-in-Genomics
This repository appears to be dedicated to exploring the application of deep learning techniques in the field of genomics.
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fmd5sum
Made the md5sum faster and install on [PyPi](https://pypi.org/project/fmd5sum/)
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genomic-features-test
to statistically test whether two genomic features are related
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Pred_CIS
使用MEME软件预测基因组顺势调控元件
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random-script
The random script is for generating random line from sample .txt file.
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RNA-seq-Analysis
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scRNA-seq-analysis
For scRNA-seq analysis, this pipeline can resolve most of the problems that you may encounter.
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sequencing-read-depth-calculate
The repository is used to calculate the NGS data sequencing read depth.
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jlchen5's Repositories

jlchen5/CSU-thesis-endnote
endnote style of CSU thesis
11
jlchen5/CT-analysis
Performing the Circuit topology method in cancer genome
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jlchen5/fmd5sum
Made the md5sum faster and install on [PyPi](https://pypi.org/project/fmd5sum/)
Language:Python10
jlchen5/Pred_CIS
使用MEME软件预测基因组顺势调控元件
Language:Python10
jlchen5/Deep-Learning-in-Genomics
This repository appears to be dedicated to exploring the application of deep learning techniques in the field of genomics.
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jlchen5/AI-For-Beginners
12 Weeks, 24 Lessons, AI for All!
jlchen5/BioCondAI
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jlchen5/Bioinformatics-for-beginners
This markdown dives into the exciting field where biology meets computer science. We'll explore the fundamentals of bioinformatics, introduce basic coding concepts in Python and R, and provide a glimpse into the world of Linux, equipping you with the tools to navigate this ever-evolving discipline.
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jlchen5/Condensate-analysis
image analysis for protein condensate
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jlchen5/Copy-number-analysis
This shell script is for analysing the DNA copy number via WGS data
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jlchen5/genome_topology
Topological analysis of genome folds based on Circuit Topology and Network Topology
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jlchen5/GNN-scHiC
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jlchen5/GPTCelltype
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jlchen5/GraphEmbedding
Implementation and experiments of graph embedding algorithms.
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jlchen5/grok-1
Grok open release
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jlchen5/Hi-C-Data-analysis
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jlchen5/Higashi
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
jlchen5/jlchen5
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jlchen5/jlchen5.github.io
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jlchen5/machine-learning-in-single-cell-analysis
Machine learning method in single cell analysis
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jlchen5/npz_export
Export the .npz file
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jlchen5/nuc_dynamics
Particle dynamics and simulated annealing for chromosome structure calculation
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jlchen5/PSPire
PSPire is a machine learning model based on integrated residue-level and structure-level features to predict phase-separating proteins. It is written in Python3 and is available as a command line tool.
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jlchen5/python-course-materials
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jlchen5/reference
为开发人员分享快速参考备忘清单(速查表)
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jlchen5/scGHOST
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
jlchen5/scHiC
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jlchen5/scHiCTools
a computational tool for analyzing single cell Hi-C data
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jlchen5/TCGA-R-analysis
R code for analyzing the TCGA data
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jlchen5/ubuntu-ssh
在 Ubuntu 中配置 SSH 的完整指南
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