jlchen5

Welcome join @X-Omics1

Leiden UniversityNetherlands

Pinned Repositories

CELR-D-22-00015
Repository that contains the analysis from Li et al. Cell Regeneration, 2022.
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CSU-thesis-endnote
endnote style of CSU thesis
1 1 01
Deep-Learning-in-Genomics
This repository appears to be dedicated to exploring the application of deep learning techniques in the field of genomics.
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fmd5sum
Made the md5sum faster and install on [PyPi](https://pypi.org/project/fmd5sum/)
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genomic-features-test
to statistically test whether two genomic features are related
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jlchen5
1 1 00
Pred_CIS
使用MEME软件预测基因组顺势调控元件
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RNA-seq-Analysis
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scRNA-seq-analysis
For scRNA-seq analysis, this pipeline can resolve most of the problems that you may encounter.
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sequencing-read-depth-calculate
The repository is used to calculate the NGS data sequencing read depth.
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jlchen5's Repositories

jlchen5/CSU-thesis-endnote
endnote style of CSU thesis
1 1 01
jlchen5/CT-analysis
Performing the Circuit topology method in cancer genome
Language:Jupyter Notebook1 0 10
jlchen5/fmd5sum
Made the md5sum faster and install on [PyPi](https://pypi.org/project/fmd5sum/)
Language:Python1 1 10
jlchen5/jlchen5
1 1 00
jlchen5/Deep-Learning-in-Genomics
This repository appears to be dedicated to exploring the application of deep learning techniques in the field of genomics.
Language:Python0 1 00
jlchen5/Bioinformatics-for-beginners
This markdown dives into the exciting field where biology meets computer science. We'll explore the fundamentals of bioinformatics, introduce basic coding concepts in Python and R, and provide a glimpse into the world of Linux, equipping you with the tools to navigate this ever-evolving discipline.
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jlchen5/Calculate-contig-N50
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jlchen5/clinvar
ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.
jlchen5/DNA-helix
使用python代码绘制一个会旋转的DNA双链
Language:Python
jlchen5/HapCUT2
software tools for haplotype assembly from sequence data
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jlchen5/HapHiC
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
jlchen5/Hi-C-Data-analysis
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jlchen5/jlchen5.github.io
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jlchen5/longshot
diploid SNV caller for error-prone reads
jlchen5/machine-learning-in-single-cell-analysis
Machine learning method in single cell analysis
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jlchen5/mosaic
jlchen5/Natural_Language_Processing_with_Transformers
Natural Language Processing with Transformers 中译本，最权威Transformers教程
jlchen5/npz_export
Export the .npz file
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jlchen5/PSPire
PSPire is a machine learning model based on integrated residue-level and structure-level features to predict phase-separating proteins. It is written in Python3 and is available as a command line tool.
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jlchen5/python-course-materials
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jlchen5/scHiC
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jlchen5/scHiCTools
a computational tool for analyzing single cell Hi-C data
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jlchen5/sentieon-models
Model files for Sentieon variant callers
jlchen5/sentieon-scripts
Helper scripts for biological data processing from Sentieon
jlchen5/SNP-analysis
Language:Shell
jlchen5/TCGA-R-analysis
R code for analyzing the TCGA data
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jlchen5/Translatomer
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jlchen5/ubuntu-ssh
在 Ubuntu 中配置 SSH 的完整指南
1 0
jlchen5/vcf2-homo
1 0
jlchen5/Work_flow_of_population_genetics
整理常用的群体遗传学分析流程和脚本