joao1980

Pinned Repositories

• genomad

  geNomad: Identification of mobile genetic elements

  Language:Python201513419

• matam

  Mapping-Assisted Targeted-Assembly for Metagenomics

  Language:Python1941159

• NanoPhase

  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and short reads (hybrid strategy)

  Language:Shell263131

• veba

  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

  Language:Python804459

• Circleator

  Flexible circular visualization of genome-associated data with BioPerl and SVG.

  Language:Perl475428

• ISCompare

  ISCompare, an opensource program to identify Differentially Located Insertion Sequences

  Language:Python11261

• Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C79730701169

• drep

  Rapid comparison and dereplication of genomes

  Language:Python270823238

• dfast_core

  DDBJ Fast Annotation and Submission Tool

  Language:Python7854714

• staramr

  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

  Language:Python120712328

joao1980's Repositories