joao1980

Pinned Repositories

• genomad

  geNomad: Identification of mobile genetic elements

  Language:Python186512017

• matam

  Mapping-Assisted Targeted-Assembly for Metagenomics

  Language:Python1941159

• NanoPhase

  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and short reads (hybrid strategy)

  Language:Shell23391

• veba

  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

  Language:Python763449

• Circleator

  Flexible circular visualization of genome-associated data with BioPerl and SVG.

  Language:Perl465428

• ISCompare

  ISCompare, an opensource program to identify Differentially Located Insertion Sequences

  Language:Python111

• Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C76628687165

• drep

  Rapid comparison and dereplication of genomes

  Language:Python247822236

• dfast_core

  DDBJ Fast Annotation and Submission Tool

  Language:Python7654214

• staramr

  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

  Language:Python115712226

joao1980's Repositories