jonathancrabtree/Circleator

Issues

• Background color

  #42 opened 5 months ago by joao1980
  0

• FATAL - duplicate contig id

  #41 opened 5 months ago by joao1980
  0

• Build test failed and steps to build circular SNPs genome

  #40 opened 2 years ago by nsmt89
  0

• MSG: Failed validation of sequence '1'. Invalid characters were:

  #39 opened 3 years ago by Karimi-81
  0

• Plot flatfile using Ensemble GTF

  #37 opened 3 years ago by gk7279
  0

• Add samtools to requirements.

  #9 opened 6 years ago by jonathancrabtree
  0

• Can't locate object method "get_values" of "Circleator::SeqFunction::BAMCoverage"

  #38 opened 6 years ago by michaelgruenstaeudl
  0

• Can't use string ("") as a subroutine ref while "strict refs" in use

  #31 opened 7 years ago by annaallueg
  22

• Make t/circleator.t insensitive to minor Perl SVG module changes.

  #1 opened 7 years ago by jonathancrabtree
  3

• Add chord drawing functionality.

  #36 opened 7 years ago by jonathancrabtree
  0

• Some Rect elements contain "r" (radius) attribute

  #33 opened 7 years ago by jonathancrabtree
  1

• LinePacker doesn't handle origin-spanning features

  #35 opened 7 years ago by jonathancrabtree
  1

• feat-track reference to track with user feat definition creates duplicate feature

  #34 opened 7 years ago by jonathancrabtree
  0

• length_kb label function labels origin-spanning features with negative lengths

  #32 opened 7 years ago by jonathancrabtree
  0

• Improved error checking: automatically list and/or find track options.

  #30 opened 8 years ago by jonathancrabtree
  0

• Automatically compute --pad, --pad_left, etc.

  #29 opened 8 years ago by jonathancrabtree
  0

• Add linear mode option

  #28 opened 8 years ago by jonathancrabtree
  0

• Labels not showing up

  #27 opened 9 years ago by dkoslicki
  5

• Regression tests using system perl instead of the one used to run Build.PL

  #26 opened 9 years ago by jonathancrabtree
  0

• Bug in loop handling code when multiple loops are present

  #25 opened 9 years ago by jonathancrabtree
  1

• Make t/circleator.t insensitive to architecture/platform.

  #21 opened 9 years ago by jonathancrabtree
  0

• Add walkthroughs/tutorials for basic use-cases.

  #11 opened 11 years ago by jonathancrabtree
  3

• Possible HTML/CSS problem with predefined tracks page

  #24 opened 10 years ago by jonathancrabtree
  0

• Curved rectangle outline/path fails to account for stroke-width

  #23 opened 10 years ago by jonathancrabtree
  1

• Internal links broken

  #20 opened 10 years ago by jonathancrabtree
  1

• See if there's a way to get GitHub pages to treat .cfg files as plain text.

  #18 opened 11 years ago by jonathancrabtree
  2

• Automatically set packer=none when label-type != curved

  #22 opened 10 years ago by jonathancrabtree
  0

• Fix Markdown code blocks in documentation.

  #15 opened 11 years ago by jonathancrabtree
  1

• Update "Citation" section of README.md and gh-pages

  #7 opened 10 years ago by jonathancrabtree
  0

• Filter BioPerl Unrecognized DBSOURCE data warning.

  #19 opened 11 years ago by jonathancrabtree
  0

• Reduce memory requirements of Circleator/Parser/SNP_Table.pm

  #17 opened 11 years ago by jonathancrabtree
  0

• Add links to config files to Gallery images.

  #8 opened 11 years ago by jonathancrabtree
  0

• Make t/circleator.t save log files if tests fail.

  #2 opened 11 years ago by jonathancrabtree
  0

• Build.PL only works for non-system-wide installs

  #12 opened 11 years ago by jonathancrabtree
  0

• favicon.ico not showing up on GitHub pages

  #16 opened 11 years ago by jonathancrabtree
  0

• Update README.md links/images after gh-pages-dev goes live.

  #6 opened 11 years ago by jonathancrabtree
  0

• Rename feat-type option to "output-feat-type" or similar.

  #14 opened 11 years ago by jonathancrabtree
  0

• Check/fix z-index processing.

  #13 opened 11 years ago by jonathancrabtree
  0

• Check gallery images for release restrictions.

  #3 opened 11 years ago by jonathancrabtree
  1

• Try to make an rc1 release before the repo is public.

  #10 opened 11 years ago by jonathancrabtree
  1

• Add BED file parser.

  #4 opened 11 years ago by jonathancrabtree
  0

• Add WIG file parser.

  #5 opened 11 years ago by jonathancrabtree
  0