johnbachman

johnbachman's Stars

• dfm/emcee

  The Python ensemble sampling toolkit for affine-invariant MCMC

  Language:Python1.5k86292431

• elifesciences/sciencebeam-parser

  A set of tools to allow PDF to XML conversion, utilising Apache Beam and other tools. The aim of this project is to bring multiple tools together to generate a full XML document.

  Language:Python294303133

• pysb/pysb

  Python framework for Systems Biology modeling

  Language:Python1651928071

• Kappa-Dev/KappaTools

  Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at

  Language:OCaml1101863640

• AMICI-dev/AMICI

  Advanced Multilanguage Interface to CVODES and IDAS

  Language:Jupyter Notebook1081294330

• biomathman/pycellerator

  Biological Simulation using Reaction-Like Arrows

  Language:Jupyter Notebook8211

• jmuhlich/bayessb

  Language:Python7208

• clopezx/earm

  EARM V2.0 FILES

  Language:Python32017

• jniznan/rbm-photosynthesis

  Rule-based models of photosynthesis

  Language:Python3400

• johnbachman/pysb

  Python framework for Systems Biology modeling

  Language:Python2200

• johnbachman/earm

  Extrinsic apoptosis reaction model

  Language:Python1261