Kappa-Dev/KappaTools

Issues

• The Replay module ignores tokens

  #675 opened 10 months ago by jonathan-laurent
  0

• Trace, final print

  #674 opened 10 months ago by hmedina
  0

• KaSim inputs.ka emits >= as =

  #672 opened a year ago by ethulhu
  0

• KaSim cannot read empty strings ("")

  #669 opened a year ago by ethulhu
  0

• Trace, init, T0

  #667 opened a year ago by hmedina
  0

• False error from KaSa: mod, tokens, `<-`

  #661 opened a year ago by hmedina
  16

• Stack overflows

  #666 opened a year ago by hmedina
  18

• `File "core/siteGraphs/edges.ml", line 418, characters 13-19: Assertion failed`

  #665 opened a year ago by hmedina
  8

• Kappapp frozen?

  #642 opened 2 years ago by hmedina
  4

• What is [E] ?

  #664 opened a year ago by hmedina
  8

• abbreviated time print in snapshots

  #662 opened a year ago by hmedina
  4

• Provide a more user-friendly format for traces (follow up from #658)

  #663 opened a year ago by feret
  7

• Add wheels for kappy for Python 3.10 on PyPI

  #652 opened a year ago by bgyori
  9

• Using the $SNAPSHOT perturbation corrupts generated trace files?

  #656 opened a year ago by jonathan-laurent
  7

• Error: don't use edit notation in observables

  #617 opened 4 years ago by hmedina
  0

• Inconsistent behavior in snapshot naming between KaSimInBrowser and KaSimInCommandLine for `[E]`

  #660 opened a year ago by hmedina
  4

• Inconsistent action order in generated trace files

  #658 opened a year ago by jonathan-laurent
  5

• Agent "identifiers" are recycled and so do not identify agents

  #659 opened a year ago by hmedina
  3

• How to test the existence of an agent with a given ID?

  #653 opened a year ago by jonathan-laurent
  0

• Better documentation for `kappa-library`

  #654 opened a year ago by jonathan-laurent
  0

• OCaml 5: explicit unix library loading

  #650 opened a year ago by hmedina
  0

• Build error with --kappa-binaries: Library "result" not found

  #647 opened 2 years ago by wwaites
  1

• Dune installs latest yojson; tools require yojson 1.7.0

  #644 opened 2 years ago by hmedina
  4

• One shot perturbations ignore requested time

  #643 opened 2 years ago by hmedina
  0

• Installation error

  #641 opened 2 years ago by hmedina
  4

• Error while compiling kappa-library: unerasable-optional-arguments

  #640 opened 3 years ago by hmedina
  5

• Collision with link id after counter decrementation.

  #638 opened 3 years ago by feret
  2

• Kappy installation issue

  #634 opened 3 years ago by bgyori
  10

• Alarm perturbations trigger abnormally with -mixture option

  #630 opened 3 years ago by hmedina
  1

• The opam archive for version 4.0.0 seems to have changed

  #636 opened 3 years ago by mseri
  1

• "make all" issue for KappaTools-4.1beta (following successful opam pin add --dev KaSim)

  #635 opened 3 years ago by JeffEdge
  2

• Using the KaSim API as a dependency

  #633 opened 3 years ago by jonathan-laurent
  4

• bug in kappy retrieval of snapshots with variables in their name

  #632 opened 3 years ago by yarden
  0

• potentially incorrect complex name in KaDE output (SBML format)?

  #631 opened 3 years ago by yarden
  2

• Error using counters

  #629 opened 4 years ago by wwaites
  1

• typos

  #628 opened 4 years ago by vd1
  0

• error running kappy unit tests

  #615 opened 4 years ago by yarden
  6

• feature request: have -mixture accept JSON format

  #627 opened 4 years ago by yarden
  0

• odd behavior in parsing complexes from a string with kappy

  #624 opened 4 years ago by yarden
  6

• Influence map resets every ~20s in "track cursor" mode

  #626 opened 4 years ago by hmedina
  0

• inputs.ka invalid when contact map overconstraints observables defined

  #625 opened 4 years ago by hmedina
  3

• wealky typo

  #620 opened 4 years ago by vd1
  0

• dandling typo

  #621 opened 4 years ago by vd1
  0

• Error parsing MathML: not well-formed Line Number 1, Column 120

  #622 opened 4 years ago by hmedina
  0

• typo in non weakly reversible warning

  #619 opened 4 years ago by vd1
  0

• typo

  #613 opened 4 years ago by vd1
  0

• Kappy release for Python 3.8 missing executables

  #618 opened 4 years ago by bgyori
  2

• Supplying initial condition in a file

  #614 opened 4 years ago by ajeet619
  2

• %mod function is not working

  #612 opened 4 years ago by ajeet619
  3

• Error (warning 67): unused functor parameter Basic.

  #611 opened 4 years ago by hmedina
  0