johncolby
My research interests focus on developing and applying neuroimaging methods for the analysis of human brain imaging data.
Marin HealthSan Francisco, CA
Pinned Repositories
air_download
Command line interface to the Automated Image Retrieval (AIR) Portal
along-tract-stats
A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
dput
Generate paste-able ASCII representations of MATLAB variables
DTI-Preprocessing
Automated diffusion imaging workflow using FSL, Diffusion Toolkit, and the LONI Pipeline
macOS-KVM
Streamlined macOS QEMU KVM Hackintosh configuration using OpenCore and libvirt
svid_paper
Code for BraTS 2018 SVID paper
SVM-RFE
An R implementation of the (multiple) Support Vector Machine Recursive Feature Elimination (mSVM-RFE) feature ranking algorithm
unet_brats
3D U-Net deep learning segmentation of BraTS 2018 data with mxnet
johncolby's Repositories
johncolby/macOS-KVM
Streamlined macOS QEMU KVM Hackintosh configuration using OpenCore and libvirt
johncolby/SVM-RFE
An R implementation of the (multiple) Support Vector Machine Recursive Feature Elimination (mSVM-RFE) feature ranking algorithm
johncolby/along-tract-stats
A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
johncolby/DTI-Preprocessing
Automated diffusion imaging workflow using FSL, Diffusion Toolkit, and the LONI Pipeline
johncolby/dput
Generate paste-able ASCII representations of MATLAB variables
johncolby/svid_paper
Code for BraTS 2018 SVID paper
johncolby/air_download
Command line interface to the Automated Image Retrieval (AIR) Portal
johncolby/unet_brats
3D U-Net deep learning segmentation of BraTS 2018 data with mxnet
johncolby/cvtex
XeTeX cv templates
johncolby/A-test-repo
johncolby/ats_demo
An interactive demonstration of the along-tract-stats package using the Processing environment.
johncolby/degen
Automatically generate lumbar spine radiology reports
johncolby/R-UMCD
An R interface to the UCLA Multimodal Connectivity Database (UMCD)
johncolby/rad_apps
Micro application framework for medical image analysis on a clinical PACS
johncolby/rsna_heme
Automated detection and classification of intracranial hemorrhage at noncontrast CT
johncolby/acgme_talk
https://johncolby.github.io/acgme_talk
johncolby/AMD_Vanilla
Native AMD macOS via OpenCore
johncolby/ASL_processing
Processing scripts for ASL data to extract cerebral blood flow (CBF) and cerebrovascular reactivity (CVR) maps
johncolby/asnr2020
End-to-End Automated Medical Image Analysis on the UCSF Clinical PACS
johncolby/BoneAge
Pediatric Bone Age Calculator Redux
johncolby/brats_preprocessing
BraTS preprocessing tools
johncolby/dcmclass
Tools for identifying imaging modality based on DICOM header data
johncolby/gluon-cv
Gluon CV Toolkit
johncolby/infarcts
https://johncolby.github.io/infarcts
johncolby/mdloader
Massdrop Firmware Loader - for CTRL / ALT / SHIFT / Rocketeer keyboards
johncolby/multi-model-server
Multi Model Server is a tool for serving neural net models for inference
johncolby/presentation_template
My xaringan presentation template
johncolby/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
johncolby/test
johncolby/Textmate-GitHub-textile-preview
Replacement for the TextMate Textile bundle “Preview” command that handles the custom GitHub wiki markup for Wiki links and code blocks