Pinned Repositories
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
jheatmap
Javascript Heatmap viewer
codesnips
Automatically exported from code.google.com/p/jordeu-codesnips
nextflow-language-server
Nextflow LSP server
pytalks
A repository to share some talks
wicket
Mirror of Apache Wicket
nextflow
A DSL for data-driven computational pipelines
tower-agent
Agent app that allows connecting remote batch schedulers to Tower Cloud
tower-cli
Nextflow Tower CLI tool
jordeu's Repositories
jordeu/pytalks
A repository to share some talks
jordeu/nextflow-language-server
Nextflow LSP server
jordeu/codesnips
Automatically exported from code.google.com/p/jordeu-codesnips
jordeu/nf-launcher
jordeu/pycliwrapper
Generic Python CLI wrapper
jordeu/Crefi
Crefi is a workload creation tool. It can be used to create workload in multiple threads, creating files of different types, different sizes in different directory structures and perform multiple operations on the created data.
jordeu/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
jordeu/eve
REST API framework designed for human beings
jordeu/eve-swagger
Swagger extension for Eve-powered RESTful APIs
jordeu/fuse
A Go package for implementing a FUSE file system.
jordeu/gendas
Data query library highly focus to work with genomic datasets
jordeu/go-simple-upload-server
Simple HTTP server to save artifacts
jordeu/golang_prog_fusionfs_debug
jordeu/kubernetes
Production-Grade Container Scheduling and Management
jordeu/manta-testing
jordeu/metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
jordeu/nextflow
A DSL for data-driven computational pipelines
jordeu/nf-jupyterlite
Demo pipeline to create a JupyterLite report
jordeu/nf-report-base64
Create a report from a base64 string
jordeu/nf-sessions-poc
jordeu/nf-streams-poc
jordeu/nf-tests
jordeu/pangenome
Renders a collection of sequences into a pangenome graph.
jordeu/reports-test-nf
jordeu/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
jordeu/rnaseq-nf
A proof of concept of RNAseq pipeline
jordeu/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
jordeu/scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
jordeu/sgdemux_folder_nf2
jordeu/wave-showcase
Examples showing how to configure Nextflow to run with Wave containers provisioning service