jsherfey/dnsim

Issues

• "Errors" in regular expressions?

  #70 opened 9 years ago by asoplata
  0

• Simulation size not scaling very high

  #68 opened 9 years ago by asoplata
  1

• Current 'dev' simstudy using coder + cluster = broken?

  #66 opened 9 years ago by asoplata
  5

• Pruning archaic/deprecated code: Unused functions and Graveyard-commented-code

  #63 opened 9 years ago by asoplata
  4

• Remove duplicate functions

  #65 opened 9 years ago by asoplata
  2

• Deprecated function `buildmodel2()` still used

  #64 opened 9 years ago by asoplata
  1

• New data format flag 'timesurfer_flag' not passed from simstudy() to runsim()

  #60 opened 9 years ago by asoplata
  0

• Can't save large simulation data w/o -v7.3 flag | Is there a good reason `sim_data`'s -v7.3 save flag is commented out?

  #58 opened 9 years ago by asoplata
  1

• MAJOR bug: (Artifex Ghostscript bug) N>1 multiplicity sims are unable to save DNSIM plots (e.g. voltage) when run on the cluster

  #56 opened 9 years ago by asoplata
  10

• The default reversal potential for an inhibitory synapse is 0 mV?

  #54 opened 9 years ago by jchartove
  4

• Simlink files break when copied onto Windows

  #53 opened 9 years ago by jchartove
  1

• Major bug: Jobs run on cluster overwrite OTHER simulations in the same batch

  #48 opened 9 years ago by asoplata
  3

• Using custom mechanisms in cluster simulations on fresh install

  #45 opened 9 years ago by asoplata
  1

• Exponential Synaptic

  #47 opened 9 years ago by davestanley
  4

• Standarize flag usage

  #50 opened 9 years ago by asoplata
  0

• Jobs run on cluster with identical end filenames (regardless of path) overwrite each other if sent to cluster within a small amount of time

  #46 opened 9 years ago by asoplata
  2

• Choose a license

  #44 opened 9 years ago by asoplata
  0

• Plots being saved to disk incorrectly

  #42 opened 9 years ago by asoplata
  0

• Spectral analysis figure not saving when DNSIM run without a GUI

  #41 opened 9 years ago by asoplata
  0

• Add phase-amplitude coupling analysis

  #40 opened 9 years ago by asoplata
  0

• Consolidate mechanism naming convention

  #4 opened 10 years ago by asoplata
  4

• build-in support for discrete-event simulation

  #29 opened 10 years ago by jsherfey
  0

• clean code in buildmodel etc so params.mat is used regardless of coder/codegen

  #38 opened 10 years ago by kupiqu
  0

• bug in buildmodel.m when coder is set to 1 but codegen is not available

  #35 opened 10 years ago by kupiqu
  2

• params.mat mixes up variables of different mechanisms

  #37 opened 10 years ago by kupiqu
  2

• different results when new data format is used

  #36 opened 10 years ago by kupiqu
  1

• Consolidate open data output filetype

  #2 opened 10 years ago by asoplata
  2

• dnsim time units

  #11 opened 10 years ago by kupiqu
  0

• add variable units to dnsim

  #28 opened 10 years ago by kupiqu
  0

• Cannot change the value of a parameter within buildmodel

  #6 opened 10 years ago by kupiqu
  2

• New branch codegen (matlab code generator)

  #10 opened 10 years ago by kupiqu
  4

• mechanism 'iNMDA.txt' is malformed

  #14 opened 10 years ago by asoplata
  0

• doc tests

  #25 opened 10 years ago by kupiqu
  1

• Cannot log into infinite brain account on DNSIM GUI

  #24 opened 10 years ago by asoplata
  0

• cannot introduce initial conditions for alpha/beta in activation/inactivation state variables

  #21 opened 10 years ago by kupiqu
  0

• cannot create 'params.mat' because 'odefun' directory does not exist

  #18 opened 10 years ago by kupiqu
  1

• try-catch for errors in codegen should also delete odefun script as well as return to main directory

  #19 opened 10 years ago by kupiqu
  0

• Saving option for specific mechanistic functions

  #15 opened 10 years ago by kupiqu
  0

• Raise an error for not allowed or incorrect instructions

  #7 opened 10 years ago by kupiqu
  1

• Function handle `Iext` in `<simulation-data-file>.parms.biosim.Iext` prevents export of data file to JSON file

  #5 opened 10 years ago by asoplata
  1

• create wiki and link to infinitebrain.org

  #3 opened 10 years ago by jsherfey
  0