kaylia-duncan

kaylia-duncan's Stars

• vega/vega

  A visualization grammar.

  Language:JavaScript11.2k2881.9k1.5k

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k737.9k902

• karthik/wesanderson

  A Wes Anderson color palette for R

  Language:R1.9k5025142

• hbctraining/scRNA-seq_online

  Language:R4931295175

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R377141.1k133

• NBISweden/excelerate-scRNAseq

  Single RNA-seq data analysis with R (Finland, May, 2019)

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• satijalab/sctransform

  R package for modeling single cell UMI expression data using regularized negative binomial regression

  Language:R2071718133

• NBISweden/workshop-scRNAseq

  Single cell RNA sequencing analysis course

  Language:HTML19245997

• SingleR-inc/SingleR

  Clone of the Bioconductor repository for the SingleR package.

  Language:R1721221019

• csdaw/ggprism

  ggplot2 extension inspired by GraphPad Prism

  Language:R16962220

• quadbio/scRNAseq_analysis_vignette

  Tutorial for scRNA-seq data analysis beginners using R

  1366454

• CahanLab/singleCellNet

  SingleCellNet: classify single cells across species and platforms

  Language:R12885228

• swaruplab/Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease

  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease

  Language:R8111230

• quon-titative-biology/scAlign

  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

  Language:R3451012

• linnarsson-lab/FISHscale

  Spatial analysis of FISH data

  Language:Jupyter Notebook275159

• AllenInstitute/MTG_celltypes

  Human cortical cell types

  Language:R24617

• AllenInstitute/scrattch.bigcat

  iterative clustering pipeline of big single cell datasets.

  Language:R221279

• juliendelile/MouseSpinalCordAtlas

  Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord" (2019)

  Language:R22328

• ncborcherding/ccRCC

  Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma

  Language:PostScript20256

• caleblareau/mtscATACpaper_reproducibility

  Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020

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• wulabupenn/Hu_MolCell_2017

  "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus RNA-Seq"

  13005

• pmajka/poSSum

  Language:Python12102

• JuliaPlots/VennEuler.jl

  Venn/Euler Diagrams for Julia

  Language:Julia114206

• hms-dbmi/crestree

  Neural Crest Fate Decisions

  Language:R10616

• gegenhu/estrogen_gene_reg

  Custom code for Gegenhuber et al. 2021

  Language:R8101

• JoachimLu/Decoding-neuronal-diversification-by-multiplexed-single-cell-RNA-seq

  Custom code for analysis of single-cell RNA sequencing data of induced neurons

  Language:R410

• konopkalab/early-postnatal-striatal-single-cell-rna-seq

  early postnatal striatal single cell RNA sequencing

  4200

• LouisFaure/sensoryfates_paper

  Code for reproducibility

  Language:Jupyter Notebook35

• corticaltone/Standard-Integration-Seurat

  Protocol for standard integration of scRNAseq data sets using Seurat

  Language:R120

• KarolCichewicz/MIA_RNA-Seq

  MIA_RNA-Seq

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