Pinned Repositories
phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
changer-ranger
Fun with the optimal change problem
genome-bin-tools
Interactive tools for metagenome visualization and binning in R
hanziart
hanzi version of asciiart
learn-teochew
Teochew language for heritage speakers
mass2adduct
Analysis of matrix-metabolite adducts in MALDI mass spectrometry imaging datasets
mitonotate
phylogenomics-tools
Scripts for automating tasks in phylogenetics with microbial genomes
parsetc
Parse and convert between different Teochew romanization systems
bleties
IES retention analysis from PacBio CCS reads
kbseah's Repositories
kbseah/mass2adduct
Analysis of matrix-metabolite adducts in MALDI mass spectrometry imaging datasets
kbseah/kbseah.github.io
Personal webpage
kbseah/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
kbseah/bioconda-recipes
Conda recipes for the bioconda channel.
kbseah/bioinf-formats
links to file format definitions
kbseah/biopython
Official git repository for Biopython (originally converted from CVS)
kbseah/blog
kbseah/codetta
kbseah/demo_jupyter
kbseah/DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
kbseah/documentation
GeoNode Documentation
kbseah/gbtquick
lazy person's blobtools2
kbseah/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
kbseah/isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
kbseah/KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
kbseah/lark-railroad
A railroad diagram generator from lark grammars
kbseah/MB_Pipeline
Metabarcoding Pipeline for Illumina Sequencing Data
kbseah/MD
Metagenomic diversity index calculator and example .faa contig data.
kbseah/mineswiffer
Minesweeper clone
kbseah/misc
kbseah/ppsdb-globi-export
Export of the Protist-Prokaryote Symbiosis Database for indexing by GloBI
kbseah/ppsdb-utils
kbseah/protaxA
PROTAX for aligned sequences
kbseah/read_docs
kbseah/seaheuchin_website
Content for seaheuchin.info
kbseah/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
kbseah/Teochew-Rime
潮语拼音输入法 - Rime schema for Teochew dialect - https://kahaani.github.io/dieghv
kbseah/toy-wf
troubleshooting containerization of Snakemake workflow with a global conda directive
kbseah/wdqsutils
Generate Wikidata QuickStatements for housekeeping tasks
kbseah/whokaryote
Classify metagenomic contigs as eukaryotic or prokaryotic