HRGV/phyloFlash

Issues

• No SSU rRNA sequences found in trusted contigs by Barrnap

  #192 opened 4 months ago by AbigailJTH
  5

• vsearch error

  #191 opened 8 months ago by roo-weed
  0

• Conda/mamba install failed for bedtools doesn't found

  #190 opened 9 months ago by luigallucci
  0

• Error was 'No such file or directory' and return code '256'

  #169 opened 2 years ago by MAXINELSX
  2

• Conda install doesn't work

  #189 opened a year ago by YuXiongwu
  0

• How to run phyloFlash with Multi-Samples in For Loops

  #187 opened a year ago by Rainjie-afk
  0

• solving environment took forever

  #185 opened a year ago by jianshu93
  1

• Generating heatmap with custom clustering

  #186 opened a year ago by ArnoHagenbeek
  0

• Conda install phyloFlash stalls while solving environment

  #183 opened a year ago by jwilliams648
  2

• Incomplete taxonomic paths in .phyloFlash.NTUfull_abundance.csv output

  #184 opened a year ago by chassenr
  3

• Conda issue

  #179 opened a year ago by Unaimend
  3

• Inappropriate ioctl for device

  #182 opened a year ago by nick-youngblut
  2

• SSU RefNR: Failed to establish connection.

  #177 opened 2 years ago by nick-youngblut
  6

• phyloFlash.pl: -nozip not functioning

  #180 opened 2 years ago by nick-youngblut
  3

• nhmmer failure: Error was 'Inappropriate ioctl for device' and return code '35584'

  #178 opened 2 years ago by osvatic
  2

• New URL for ENA portal API

  #176 opened 2 years ago by kbseah
  0

• Incorrect counting of read pairs

  #173 opened 2 years ago by kbseah
  1

• Run Phyloflash with custom database?

  #172 opened 2 years ago by whitnersyrena
  1

• Assembly of partial rRNA sequences

  #171 opened 2 years ago by justinmaire
  0

• Run PhyloFlash with multiple datasets?

  #170 opened 2 years ago by whitnersyrena
  0

• 'LIBNAME.phyloFlash.NTUabundance.csv'-file not generated

  #168 opened 2 years ago by Mathildebd
  0

• PhyloFlash aborting while running Emirge

  #160 opened 3 years ago by Sidduppal
  3

• phyloFlash_makedb.pl aborts during clustering: return code 152

  #164 opened 3 years ago by annettemcgrath
  5

• error when running phyloflash with barrnap (FATAL: Tool execution failed!.)

  #142 opened 3 years ago by dluecking
  14

• E-value of -1

  #162 opened 3 years ago by em9
  1

• Phyloflash refernce database aborts during bowtie build

  #166 opened 3 years ago by whitnersyrena
  0

• Alignment identity?

  #165 opened 3 years ago by jzrapp
  1

• Phyloflash throws error '6400' while running phyloFlash_plotscript_svg.pl

  #156 opened 3 years ago by meet3012
  2

• SSU from single genomes

  #163 opened 3 years ago by timyerg
  0

• Error while generating heatmap

  #161 opened 3 years ago by Sidduppal
  0

• required fastafrombed to install phyloFlash

  #159 opened 3 years ago by SumTot
  1

• killed while loading SAM into Memory

  #158 opened 3 years ago by Leo-Sprengel
  2

• Issue comparing databases and locating reads used when -readlimit applied

  #157 opened 3 years ago by mmcardozo
  1

• Output files

  #155 opened 3 years ago by shunan29
  9

• bbmap -id

  #151 opened 3 years ago
  3

• Fraction of reads assembled was 0 after using sortmeRNA

  #135 opened 3 years ago by kjvilardi
  2

• raw data or clean data

  #148 opened 3 years ago by fujch7
  3

• Problem with database when running with -sortmerna

  #140 opened 3 years ago by haitaowang1
  1

• PhyloFlash fails while creating database

  #139 opened 3 years ago by psampara
  7

• Silva_v138.1: Error with classification of SSU

  #137 opened 3 years ago by isidoramorel
  2

• phyloFlash_compare.pl --barplot_scaleplotwidth not scaling

  #138 opened 3 years ago
  1

• problems in installing phyloflash and sortmerna

  #154 opened 3 years ago by GeonhoCho
  4

• new problem installing phyloflash

  #153 opened 3 years ago by pacificasommers
  2

• phyloFlash_makedb.pl gets stuck with PR2 data base

  #152 opened 3 years ago by mmcardozo
  5

• SPAdes memory limit

  #150 opened 3 years ago by aleixop
  2

• How to plot only 18S?

  #147 opened 3 years ago by JSSaini
  1

• Index creation problem with PhyloFlash – Clustering Step _ FATAL: Tool execution failed! Error was 'No such file or directory' and return code '9'.

  #146 opened 3 years ago by MeganeNoyer
  6

• phyloFlash failed at spades step

  #144 opened 3 years ago by songweizhi
  4

• FASTA of unassembled hits

  #141 opened 4 years ago by eolesin
  2

• phyloflash killed after "Reading SAM file Sample1.bbmap.sam into memory"

  #136 opened 4 years ago by jzrapp
  2