Pinned Repositories
BioInfoSummer-Workshop
Summary and presentation for BioInfoSummer introduction to image processing and analysis workshop. This is intended to be built with GitBook (http://gitbook.io).
BoneJ
A collection of plugins for bone image analysis in ImageJ
coord
Python package to interchange between different spatial coordinate systems.
fp-cop-tagless-final
homebrew-ksextra
Home Tap repo for extra formulas
ks
Home of my blog
mmi_srm
Monash Micro Imaging super-resolution microscopy by STORM workshop
peg-multimarkdown
An implementation of MultiMarkdown in C, using a PEG grammar - a fork of jgm's peg-markdown.
recursion-talk
Internal talk on recursion and corecursion
llsm
Scala library and ImageJ/Fiji plugins for preprocessing and conversion of data from early Lattice light-sheet microscope implementations
keithschulze's Repositories
keithschulze/ks
Home of my blog
keithschulze/pyome
Python library for reading and interacting with OME image metadata
keithschulze/fp-cop-tagless-final
keithschulze/recursion-talk
Internal talk on recursion and corecursion
keithschulze/concat
Constrained categories
keithschulze/dotfiles
Simple dotfiles
keithschulze/ecs-refarch-cloudformation
A reference architecture for deploying containerized microservices with Amazon ECS and AWS CloudFormation (YAML)
keithschulze/fs2
Compositional, streaming I/O library for Scala
keithschulze/functional-cross.g8
SBT/Giter8 template for multi-project functional Scala projects
keithschulze/imagej
:sparkler: Open scientific N-dimensional image processing :microscope:
keithschulze/imglib2
A generic next-generation Java library for image processing
keithschulze/jupyter-scala
Lightweight Scala kernel for Jupyter / IPython 3
keithschulze/jupyterWith
declarative and reproducible Jupyter environments - powered by Nix
keithschulze/keithschulze
My website
keithschulze/LambdaCart
Lambda syntax for Scala EDSLs
keithschulze/llsm
Scala library and ImageJ/Fiji plugins for preprocessing and conversion of data from early Lattice light-sheet microscope implementations
keithschulze/mytardis
MyTardis - a data management system for private lab/facility data
keithschulze/mytardisbf
Preview image and Bioformats metadata extraction for MyTardis
keithschulze/n5
Not HDF5
keithschulze/ngrammatic
A rust crate providing fuzzy search/string matching using N-grams
keithschulze/nix-config
Personal nixos and home-manager configurations.
keithschulze/nix-home
keithschulze/nix-templates
Some basic flake templates
keithschulze/nixos-config
NixOS/Darwin configurations
keithschulze/nteract
📘 The interactive computing suite for you! ✨
keithschulze/scripting-scala
JSR-223-compliant Scala scripting plugin.
keithschulze/sse-examples
Just some examples of using the Scijava scripting-scala ScalaScriptEngine
keithschulze/supr
Analysis of single-molecule localisation and super-resolution microscopy data.
keithschulze/tf
Experimenting/playing with Constrained Categories in Scala
keithschulze/xtscr
Spinal Cord Recovery Analysis XTension for Bitplane Imaris