Pinned Repositories
BioInfoSummer-Workshop
Summary and presentation for BioInfoSummer introduction to image processing and analysis workshop. This is intended to be built with GitBook (http://gitbook.io).
BoneJ
A collection of plugins for bone image analysis in ImageJ
coord
Python package to interchange between different spatial coordinate systems.
fp-cop-tagless-final
homebrew-ksextra
Home Tap repo for extra formulas
ks
Home of my blog
mmi_srm
Monash Micro Imaging super-resolution microscopy by STORM workshop
peg-multimarkdown
An implementation of MultiMarkdown in C, using a PEG grammar - a fork of jgm's peg-markdown.
recursion-talk
Internal talk on recursion and corecursion
llsm
Scala library and ImageJ/Fiji plugins for preprocessing and conversion of data from early Lattice light-sheet microscope implementations
keithschulze's Repositories
keithschulze/BioInfoSummer-Workshop
Summary and presentation for BioInfoSummer introduction to image processing and analysis workshop. This is intended to be built with GitBook (http://gitbook.io).
keithschulze/BoneJ
A collection of plugins for bone image analysis in ImageJ
keithschulze/coord
Python package to interchange between different spatial coordinate systems.
keithschulze/homebrew-ksextra
Home Tap repo for extra formulas
keithschulze/mmi_srm
Monash Micro Imaging super-resolution microscopy by STORM workshop
keithschulze/peg-multimarkdown
An implementation of MultiMarkdown in C, using a PEG grammar - a fork of jgm's peg-markdown.
keithschulze/peg-multimarkdown-latex-support
Default support files for generating LaTeX documents with MMD 3.0
keithschulze/bioformatsimage-mytardis-filter
Filter for generating image thumbnails and storing metadata for MyTardis using LOCI Bioformats
keithschulze/cats
Lightweight, modular, and extensible library for functional programming.
keithschulze/core.matrix
core.matrix : Multi-dimensional array programming API for Clojure
keithschulze/fpinscala
Code, exercises, answers, and hints to go along with the book "Functional Programming in Scala"
keithschulze/ij-plugin-java-sbt.g8
keithschulze/ij-plugin-jython.g8
Giter8 template for creating ImageJ plugins in Jython
keithschulze/ij-plugin-sbt.g8
keithschulze/imagej-scripting
ImageJ-specific applications of the SciJava script languages
keithschulze/imager
R package for image processing
keithschulze/imglib2-realtransform
keithschulze/pIceImarisConnector
pIceImarisConnector is a simple python class that eases communication between Bitplane Imaris (http://www.bitplane.com) and python (http://www.python.org) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).
keithschulze/pymultimarkdown
Python interface to Multimarkdown
keithschulze/scifio
SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.
keithschulze/spatstat
keithschulze/TrackMate
TrackMate is your buddy for your everyday tracking.
keithschulze/xtipythonconnect
iPythonConnect XTension for Bitplane Imaris
keithschulze/xttgmmspotimport
Imaris XTension for importing spots and tracks from TGMM tracking data into Imaris.