ken0-1n

Pinned Repositories

annot_gnomad
Annotate structural variants in gnomAD
Language:Python00
annot_utils
scripts processing annotation data from UCSC
Language:Python0 2 00
annovar2vcf
under development
Language:Python0 2 00
Genomon-ITDetector
for detecting internal tandem duplication from genome sequence data.
Language:Perl11 4 44
GenomonBreakPoint
empirical bayesian framework for detecting somatic breakpoints from sequencing data
Language:Python10
module_box_kchiba
Language:Shell10
RefGeneTxtToBed
Convert UCSC refGene.txt to bed format
Language:Python1 2 12
RNAseq_for_HGC
Language:Perl11
SvABAvsGenomonSV
The comparison of SvABA and GenomonSV
Language:Python1 2 00
three-arrowed-vcf-validator
Python tools for validating vcf file
Language:Python1 2 01

ken0-1n's Repositories

ken0-1n/vcf-validator
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Language:C
ken0-1n/fusionfusion
script for detecting fusion genes from several transcript alignment tools
Language:Python
ken0-1n/SaltStackTest
SaltStackをAWSで使ってみる
Language:Shell
ken0-1n/GenomonBreakPoint
empirical bayesian framework for detecting somatic breakpoints from sequencing data
Language:Python1
ken0-1n/genomon_pipeline_cloud
Software for executing genomon pipeline in cloud environments
Language:Python
ken0-1n/AzureBatchTutorialBwa
I am studying Azure Batch using this linked script now.
Language:Python
ken0-1n/paplot
paplot creates various dynamic and interactive reports for cancer genome analysis.
Language:JavaScript
ken0-1n/VCFtoAnnoFormat
Language:Python
ken0-1n/CGC_Docker_Test
Language:Shell
ken0-1n/GenomonHotspotBlackList
make cancer hotspot black lists
Language:Shell
ken0-1n/GenomonHotspotDatabase
To add the chromosome position in the hotspots.txt
Language:Python
ken0-1n/annovar2vcf
under development
Language:Python
ken0-1n/rna-inframe-checker
Checks, if gene fusion is inframe.
Language:Python1
ken0-1n/GenomonPipeline-AWS
ken0-1n/fusion_utils
utility for comparing fusion results
Language:Python
ken0-1n/annot_utils
scripts processing annotation data from UCSC
Language:Python
ken0-1n/GenomonComplexMutation
Detecting complex mutations
Language:Python
ken0-1n/GenomonPipeline-Azure
Using GenomonPipeline version 2.3
Language:Python
ken0-1n/STAR
RNA-seq aligner
Language:C
ken0-1n/readthedocs.org
source code to readthedocs.org
Language:Python
ken0-1n/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
Language:C
ken0-1n/GenomonSummary
script for calculating summary
Language:Python
ken0-1n/RealignmentFilter
ken0-1n/s-Pindel-ITD-Detector
a framework for the detection of somatic ITDs using Pindel
Language:Perl
ken0-1n/RNAseq_for_HGC
Language:Perl11
ken0-1n/exome_for_HGC
Language:Shell
ken0-1n/clipcrop
a tool for detecting structural variations using soft-clipping information
Language:JavaScript