ken0-1n

ken0-1n's Stars

• Ensembl/VEP_plugins

  Plugins for the Ensembl Variant Effect Predictor (VEP)

  Language:Perl142117

• friend1ws/iravnet

  intron retention associated variant detection project

  Language:Python81

• hartwigmedical/hmftools

  Various algorithms for analysing genomics data

  Language:Java19859

• ncc-gap/ASWorkflow

  Adaptive_sampling_Workflow

  Language:Shell11

• friend1ws/nanomonsv

  SV detection tool for nanopore sequence reads

  Language:Python8912

• ken0-1n/Genomon-ITDetector

  for detecting internal tandem duplication from genome sequence data.

  Language:Perl114

• numpy/numpy

  The fundamental package for scientific computing with Python.

  Language:Python28.2k10.2k

• hms-dbmi/hail-on-AWS-spot-instances

  An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed

  Language:Python1616

• mkanai/fujiplot

  :mount_fuji: Fuji plot—a circos representation of multiple GWAS results— :mount_fuji:

  Language:R7819

• brentp/cyvcf2

  cython + htslib == fast VCF and BCF processing

  Language:Cython38272

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim703101

• kahing/goofys

  a high-performance, POSIX-ish Amazon S3 file system written in Go

  Language:Go5.2k523

• Illumina/SpliceAI

  A deep learning-based tool to identify splice variants

  Language:Python409161

• wdecoster/nanostat

  Create statistic summary of an Oxford Nanopore read dataset

  Language:Python9411

• lh3/seqtk

  Toolkit for processing sequences in FASTA/Q formats

  Language:C1.4k307

• PapenfussLab/gridss

  GRIDSS: the Genomic Rearrangement IDentification Software Suite

  Language:Java25871

• Martinsos/edlib

  Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  Language:C++516167

• ncc-gap/GCATWorkflow

  Language:Python71

• hall-lab/svtools

  Tools for processing and analyzing structural variants.

  Language:Python15054

• rrwick/Long-read-assembler-comparison

  Benchmarking of long-read assembly tools for bacterial whole genomes

  Language:Python17014

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++569159

• fritzsedlazeck/Sniffles

  Structural variation caller using third generation sequencing

  Language:Python56395

• akiyoko/django-book-mysite-sample

  mysite sample for akiyoko django book

  Language:Python11029

• aokad/ecsub

  command-line tool to run batch computing tasks on Amazon Web Services (AWS).

  Language:Python73

• otiai10/gdcdl-workflow

  Language:Dockerfile21

• EBIvariation/vcf-validator

  Validation suite for Variant Call Format (VCF) files, implemented using C++11

  Language:C++13141

• seebi/dircolors-solarized

  This is a repository of themes for GNU ls (configured via GNU dircolors) that support Ethan Schoonover’s Solarized color scheme.

  Language:Makefile2.8k452

• otiai10/hotsub

  Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

  Language:Go305

• Genomon-Project/paplot

  paplot creates various dynamic and interactive reports for cancer genome analysis.

  Language:JavaScript256

• DataBiosphere/dsub

  Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

  Language:Python26544