kieranrcampbell/clonealign

Issues

• when colnames(L) get named in case they are NULL with colnames(Y) <- paste0("gene_", letters[seq_len(ncol(Y))]) wouldn't that give gene_NA if there are more than 26 genes?

  #16 opened 4 years ago by kieranrcampbell
  0

• the inference runs through one ELBO computation and throws an error (below) if rownames(L) and colnames(Y) don't match or are both NULL.

  #15 opened 4 years ago by kieranrcampbell
  0

• delta-CN and delta-RNA

  #14 opened 5 years ago by gianasco
  1

• Initial elbo is NA

  #4 opened 5 years ago by Puriney
  7

• size_factors parameter

  #13 opened 5 years ago by gianasco
  1

• module 'tensorflow' has no attribute 'reset_default_graph'

  #12 opened 5 years ago by skatragadda-nygc
  4

• Remove outlying genes now multinomial likelihood is used

  #8 opened 5 years ago by kieranrcampbell
  0

• Performance with multinomial likelihood

  #11 opened 5 years ago by pedrofale
  9

• row dimensionality issue

  #10 opened 5 years ago by NienkeMekkes
  2

• Solve the problem in installing clonealign

  #9 opened 5 years ago by XQBai
  1

• How to quantify the clonal frequency consistency between DNA and CloneAlign?

  #5 opened 6 years ago by Puriney
  2

• Different runs upon the same input generated different results

  #3 opened 6 years ago by Puriney
  4

• Add test_that for gradient checking

  #2 opened 7 years ago by kieranrcampbell
  0

• Handle situation when copy number is 0

  #1 opened 7 years ago by kieranrcampbell
  0