kieranrcampbell

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

curver-python

Curve reconstruction from noisy points (python)

embeddr

This repository is retired software

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data

ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference

ouijaflow

Probabilistic single-cell pseudotime with Edward+Tensorflow

phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds

pseudogp

Probabilistic pseudotime for single-cell RNA-seq data

switchde

Inference of switch-like differential expression along single-cell trajectories

kieranrcampbell/clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

kieranrcampbell/ouija

Descriptive probabilistic marker gene approach to single-cell pseudotime inference

kieranrcampbell/switchde

Inference of switch-like differential expression along single-cell trajectories

kieranrcampbell/phenopath

Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds

kieranrcampbell/r-workshop-march-2019

R workshop on single cell genomics at BC Cancer March 2019

kieranrcampbell/mfa

Probabilistic inference of single-cell bifurcations

kieranrcampbell/autosmk

Autogenerate templates for Snakemake rules and R scripts

kieranrcampbell/scrnaseq-digestion-paper

BC Cancer single-cell RNA-seq digestion method paper

kieranrcampbell/awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

kieranrcampbell/camlab-website

Hugo website for camlab Toronto

kieranrcampbell/cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

kieranrcampbell/ouija-paper

Reproducible analysis for Ouija paper

kieranrcampbell/snvworkflow

kieranrcampbell/Apollo-11

Original Apollo 11 Guidance Computer (AGC) source code for the command and lunar modules.

kieranrcampbell/basilisk

Python for Bioconductor

kieranrcampbell/blog

kieranrcampbell/clonealign-guide

kieranrcampbell/clonealign-pipeline

A pipeline to process scRNA-seq (10X chromium) and scDNA-seq CNV data and infer clone-specific expression using clonealign

kieranrcampbell/clonealign-snv-analysis

kieranrcampbell/cloneutils

kieranrcampbell/conferences

kieranrcampbell/kieranrcampbell.github.io

kieranrcampbell/latex-paper-template

Latex template for writing papers

kieranrcampbell/old-cellassign

Probabilistic assignment of single-cell RNA-seq to known types

kieranrcampbell/phenopath_revisions

kieranrcampbell/scangen-website

Website for single-cell cancer genomics workshop at ISMB2018

kieranrcampbell/SLMGAE

kieranrcampbell/standR

Spatial transcriptomics analyses and decoding in R

kieranrcampbell/stat-genomics-docker

Docker file for statistical genomics (single-cell focus)

kieranrcampbell/tcga-gene-dosage

A Nextflow pipeline for identifying gene dosage effects from TCGA