klebgenomics/Kleborate

Issues

• Specify kaptive dataset path at runtime

  #58 opened 2 months ago by rpetit3
  0

• makeblastdb died with a Signals.SIGBUS: 7 error

  #80 opened 6 months ago by taffners
  0

• No module named 'distutils'

  #78 opened 6 months ago by samuell
  0

• Confusion in the ID of SHV

  #77 opened 7 months ago by Amatatsu15
  1

• Kaptive not found

  #75 opened 8 months ago by hkaspersen
  1

• rmpA and rmpA2 alleles

  #74 opened a year ago by valery-shap
  7

• test_shv_09 failure with version 2.4.0 on Debian sid

  #73 opened a year ago by emollier
  2

• could not find makeblastdb

  #71 opened a year ago by revaoleg
  2

• Request: Default to 1 CPU thread

  #70 opened 2 years ago by schorlton
  0

• Assertion error when trying to run with --resistance

  #69 opened 2 years ago by lknegendorf
  0

• makeblastdb Permission write on 'data'

  #34 opened 2 years ago by Nilad
  2

• `kleborate --version` reports v2.2.0, expect 2.3.1

  #68 opened 2 years ago by kapsakcj
  2

• unit tests fail with v2.3.0

  #67 opened 2 years ago by kapsakcj
  2

• Kleborate Tutorial contains wrong description about incomplete matches

  #66 opened 2 years ago by ealdraed
  0

• error occurring for some FASTA files

  #62 opened 3 years ago by karubiotools
  2

• FASTA parser issue

  #64 opened 2 years ago by cgps-admin
  1

• How to Install Kleborate

  #38 opened 5 years ago by JerainChou
  1

• What's the meaning of 0% ？

  #61 opened 3 years ago by xuechunxu
  0

• Error_cloning_and_runing_kleborate

  #60 opened 3 years ago by MariaPerezVazquez
  0

• kleborate is failing tests on s390x

  #57 opened 3 years ago by nileshpatra
  0

• Error: mdb_dbi_open: MDB_NOTFOUND: No matching key/data pair found

  #56 opened 3 years ago by HumbiFred
  1

• Error: could not find Kaptive directory. Did you git clone with --recursive?

  #55 opened 3 years ago by yzhzu
  0

• installation failed

  #39 opened 5 years ago by JerainChou
  2

• update Rmp column to flag when a gene in the locus is truncated

  #54 opened 4 years ago by katholt
  0

• make AMR reporting compatible with hAMRonization

  #53 opened 4 years ago by katholt
  0

• improve handling of intrinsic alleles of fosA, oqxAB

  #52 opened 4 years ago by katholt
  0

• K and O loci identification

  #51 opened 4 years ago by AntonS-bio
  1

• ModuleNotFoundError: No module named 'Bio'

  #37 opened 4 years ago by shell241
  1

• Errors

  #50 opened 4 years ago by githubzhw2018
  0

• error when running kleborate: 'module' object has no attribute 'TemporaryDirectory'

  #45 opened 4 years ago by ramiroricardo
  3

• Broken link for preparing resistance gene database files.

  #47 opened 4 years ago by marjorie2205
  1

• kaptive.py :: popen uses potentialy wrong python3

  #49 opened 4 years ago by EricDeveaud
  1

• BiopythonDeprecationWarning error when running Kleborate.

  #46 opened 4 years ago by marjorie2205
  2

• Biophyton_problem

  #44 opened 4 years ago by MariaPerezVazquez
  3

• Bio.Alphabet

  #43 opened 4 years ago by mushalallam
  1

• mcr-8 and tmexCD1-toprJ1

  #41 opened 4 years ago by sunctx
  0

• Colistin resistance due to truncation or loss of MgrB or PmrB

  #36 opened 5 years ago by CatherineLud
  1

• Tests failing

  #35 opened 5 years ago by kathryn1995
  1

• Kleborate AMR

  #32 opened 5 years ago by CatherineLud
  3

• Kleborate version is different from release version

  #33 opened 5 years ago by yonist
  0

• Fos resistance

  #31 opened 5 years ago by AntonS-bio
  2

• python inconsistency

  #30 opened 5 years ago by EricDeveaud
  0

• Problems with version 0.4.0-beta

  #29 opened 5 years ago by safrye
  7

• Check for dependencies

  #23 opened 5 years ago by jhawkey
  1

• ModuleNotFoundError: No module named 'Bio'

  #26 opened 5 years ago by hrfontana
  6

• Build time test suite has call of get_resource_paths() and throws two errors

  #27 opened 5 years ago by tillea
  5

• add mcr alleles as per Partidge et al JAC 2018

  #22 opened 5 years ago by katholt
  0

• tblastn crashing cannot be avoided when running Kleborate.

  #24 opened 5 years ago by pmenzel
  1

• error message when screen for everything! Kaptive failed to run

  #25 opened 5 years ago by bhclement
  1

• Run time test suite does not work

  #28 opened 5 years ago by tillea
  1