kreshuklab

Pinned Repositories

EMBL-Deep-Learning-course-2023-
EMBL Deep Learning course 2023 exercises and materials
Language:Jupyter Notebook5 6 15
go-nuclear
Guides and code for 3D nuclear instance segmentation
Language:Python19 3 23
hylfm-net
Language:Python14 4 22
MorphoFeatures
MorphoFeatures code and data
Language:Python18 6 12
mouse-embryo-seg
3D segmentation of nuclei (fixed) and cells (live) of the developing mouse embryo
Language:Python3 4 10
plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Language:Python98 7 19531
spoco
PyTorch implementation of SPOCO
Language:Python32 7 87
teaching-dl-course-2019
EMBL Deep Learning course 2019 exercises and materials
Language:Jupyter Notebook6 15 119
teaching-dl-course-2022
Materials for the EMBL Deep Learning course
Language:Jupyter Notebook6 7 26
vem-primer-examples
Language:Jupyter Notebook4 4 10

kreshuklab's Repositories

kreshuklab/plant-seg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Language:Python98 7 19531
kreshuklab/spoco
PyTorch implementation of SPOCO
Language:Python32 7 87
kreshuklab/go-nuclear
Guides and code for 3D nuclear instance segmentation
Language:Python19 3 23
kreshuklab/MorphoFeatures
MorphoFeatures code and data
Language:Python18 6 12
kreshuklab/hylfm-net
Language:Python14 4 22
kreshuklab/teaching-dl-course-2019
EMBL Deep Learning course 2019 exercises and materials
Language:Jupyter Notebook6 15 119
kreshuklab/teaching-dl-course-2022
Materials for the EMBL Deep Learning course
Language:Jupyter Notebook6 7 26
kreshuklab/EMBL-Deep-Learning-course-2023-
EMBL Deep Learning course 2023 exercises and materials
Language:Jupyter Notebook5 6 15
kreshuklab/vem-primer-examples
Language:Jupyter Notebook4 4 10
kreshuklab/mouse-embryo-seg
3D segmentation of nuclei (fixed) and cells (live) of the developing mouse embryo
Language:Python3 4 10
kreshuklab/.github
Kreshuk Group - Machine learning for bioimage analysis
2 4 00
kreshuklab/Kinetochores_segmentation
Language:Python2 4 00
kreshuklab/predoc-course
Kreshuk Lab's EMBL EIPP predoc course teaching material, each branch keeps the record of a specific season
2 4 02
kreshuklab/shallow2deep
Shallow2deep: Exploiting feature-based classifiers for domain adaptation in semantic segmentation
Language:Jupyter Notebook2 1 01
kreshuklab/teaching-dl-course-2020
EMBL Deep Learning course 2020-21 exercises and materials
Language:Jupyter Notebook2 9 04
kreshuklab/3D-GT-tools
List of tools for creating ground truth annotations for 3D data
1 4 0
kreshuklab/bioimg_rs
A rust implementation of bioimage spec parser
Language:Rust1 2 41
kreshuklab/embryo_stage_classifier
Model for classifying drosophila embryo stages
Language:Python1 4 0
kreshuklab/gpu_envs
Setting up mixed conda and easybuild environments on the EMBL cluster
Language:Python1 5 1
kreshuklab/Plantseg-Cellpose-Augmentation
Language:Jupyter Notebook1 4 01
kreshuklab/covid-if-2
Language:Python3 0
kreshuklab/drosophila_embryo_cells
Drosophila emryo cell classification
Language:Python1 0
kreshuklab/kreshuklab-utils
Python package for common lab code
3 0
kreshuklab/neuroclear
Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded axial resolution in fluorescence microscopy, using a single image stack.
Language:Jupyter Notebook0 0
kreshuklab/rewardchecking
Checking reward functions for lines and circles with line and circle data.
Language:Jupyter Notebook4 0
kreshuklab/RLForSeg
Language:Python1 0
kreshuklab/sea-urchin-em-segmentation
Language:Python4 0
kreshuklab/takafumi_embryos_segmentation
Language:Python4 0
kreshuklab/torch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
Language:Python0 0
kreshuklab/unsup_pix_embed
Experiments for unsupervised pixel embeddings
Language:Python