kreshuklab/plant-seg

PlantSeg Crashes before finishing predictions for each slice

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Hi am using PlantSeg on Windows10 via docker/Xlaunch - i cant get past this stage without it crashing. Have tried reducing the size of input file. Any advice?

`.....
021-03-05 06:20:39,262 [ThreadPoolExecutor-0_0] INFO UNet3DPredictor - Saving predictions for slice:(slice(0, 1, None), slice(0, 32, None), slice(0, 128, None), slice(230, 358, None))...
2021-03-05 06:21:31,205 [ThreadPoolExecutor-0_0] INFO UNet3DPredictor - Saving predictions for slice:(slice(0, 1, None), slice(0, 32, None), slice(0, 128, None), slice(345, 473, None))...
2021-03-05 06:22:33,596 [ThreadPoolExecutor-0_0] INFO UNet3DPredictor - Saving predictions for slice:(slice(0, 1, None), slice(0, 32, None), slice(0, 128, None), slice(460, 588, None))...

/root/miniconda3/envs/plant-seg/lib/python3.7/site-packages/scipy/ndimage/interpolation.py:605: UserWarning: From scipy 0.13.0, the output shape of zoom() is calculated with round() instead of int() - for these inputs the size of the returned array has changed.
"the returned array has changed.", UserWarning)
XIO: fatal IO error 11 (Resource temporarily unavailable) on X server "[my ip]:0.0"
after 10886 requests (10648 known processed) with 0 events remaining.`