Pinned Repositories
MolPad
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
generative_review
Code accompanying "Generative Models: An Interdisciplinary Perspective"
glacier_mapping
Mapping glaciers in the Hindu Kush Himalaya, in partnership with ICIMOD.
Humanitarian-AI
Weekly humanitarian AI reading group at Mila.
microbiome_plvm
Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
multimedia
multimedia is an R package for multimodal mediation analysis of microbiome data. It has been designed to help integration of relative abundance, survey, and metabolomic data through causal mediation analysis.
multitable_review
Code to accompany "Multitable Methods for Microbiome Data Integration"
structSSI
Source code for R package structSSI, implementing the Hierarchical FDR procedure and Group Benjamini-Hochberg procedure.
treelapse
timelapse + trees = treelapse
alto
'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
krisrs1128's Repositories
krisrs1128/glacier_mapping
Mapping glaciers in the Hindu Kush Himalaya, in partnership with ICIMOD.
krisrs1128/generative_review
Code accompanying "Generative Models: An Interdisciplinary Perspective"
krisrs1128/stat436_s24
krisrs1128/stat679_code
krisrs1128/talks
Notes / slides for my talks.
krisrs1128/naamii_summer_2023
Code accompanying the NAAMII summer school session on "ML Foundations."
krisrs1128/stat479
krisrs1128/stat992_f23
krisrs1128/gflasso
An experimental package for graph-structured multi-task regression
krisrs1128/lake_labeller
krisrs1128/mbtransfer
`mbtransfer` is an R package for modeling microbiome dynamics. It provides functions for fitting transfer function models, simulating counterfactual trajectories, and selecting significantly perturbed taxa using mirror statistics.
krisrs1128/stat436_s23
krisrs1128/stat479_s22
Readings for Statistical Data Visualization at UW Madison, Spring 2022.
krisrs1128/interpretability_review
Code accompanying a review article on interpretability and XAI. Includes examples for both simple (sparse regression) and sophisticated (concept bottlenecks) approaches, using notebooks that can be run in a few minutes.
krisrs1128/microbiome_interventions
krisrs1128/multimedia
multimedia is an R package for multimodal mediation analysis of microbiome data. It has been designed to help integration of relative abundance, survey, and metabolomic data through causal mediation analysis.
krisrs1128/stat992_s23
Course site for STAT 992 - Spring 2023 at UW Madison.
krisrs1128/stat992_s24
krisrs1128/dsn_foundations_2023
krisrs1128/info-uncertainty
krisrs1128/learned_inference
krisrs1128/LSLab
krisrs1128/mbtransfer_demo
krisrs1128/MDSINE2
krisrs1128/methods-bio-data-workshop
Methods for Biological Data Workshop (UW-Madison)
krisrs1128/miniLNM
A miniature implementation of the logistic-normal multinomial model.
krisrs1128/MolPad
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
krisrs1128/p5_examples
krisrs1128/scLinkedView
Experimental app for visualizing scDesign estimates.
krisrs1128/svelte-example