krisrs1128

Pinned Repositories

MolPad
MolPad: An R-Shiny Package for Cluster Co-Expression Analysis in Longitudinal Microbiomics
Language:R2 2 01
generative_review
Code accompanying "Generative Models: An Interdisciplinary Perspective"
Language:HTML7 4 02
glacier_mapping
Mapping glaciers in the Hindu Kush Himalaya, in partnership with ICIMOD.
Language:Python33 7 918
Humanitarian-AI
Weekly humanitarian AI reading group at Mila.
21 7 00
interpretability_review
Code accompanying a review article on interpretability and XAI. Includes examples for both simple (sparse regression) and sophisticated (concept bottlenecks) approaches, using notebooks that can be run in a few minutes.
Language:Jupyter Notebook3 2 00
microbiome_plvm
Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
Language:R21 3 03
multimedia
multimedia is an R package for multimodal mediation analysis of microbiome data. It has been designed to help integration of relative abundance, survey, and metabolomic data through causal mediation analysis.
Language:R1 2 10
multitable_review
Code to accompany "Multitable Methods for Microbiome Data Integration"
Language:R9 6 03
treelapse
timelapse + trees = treelapse
Language:JavaScript8 4 820
alto
'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and provides visualization functions to explore the alignment and robustness of topics across environments or LDA hyper-parameters.
Language:R14 3 43

krisrs1128's Repositories

krisrs1128/generative_review
Code accompanying "Generative Models: An Interdisciplinary Perspective"
Language:HTML7 4 02
krisrs1128/naamii_summer_2023
Code accompanying the NAAMII summer school session on "ML Foundations."
3 4 0
krisrs1128/lake_labeller
Language:Python2
krisrs1128/semisynth_demo
Language:R2 3 01
krisrs1128/chtc_crash_course
Example submit patterns for statistics computing jobs at UW Madison.
Language:Shell1 3 0
krisrs1128/env-install
1
krisrs1128/LFBCR
Code accompanying "Bootstrap Confidence Regions for Learned Feature Embeddings"
Language:Jupyter Notebook1 3 0
krisrs1128/mappingvis
Language:Jupyter Notebook1 4 01
krisrs1128/stat424_f21
Language:HTML1 3 01
krisrs1128/stat992_s23
Course site for STAT 992 - Spring 2023 at UW Madison.
Language:CSS1 2 0
krisrs1128/topic_align
Language:R1 6 0
krisrs1128/geo_mlvis
Language:Jupyter Notebook01
krisrs1128/alto_demo
Language:R2 0
krisrs1128/dsn_foundations_2023
Language:HTML2 0
krisrs1128/example_glacier_data
krisrs1128/icimod.lake-vis
Language:R
krisrs1128/icimod.lake_expers
Using the modeling package for specific experiments
Language:Shell1
krisrs1128/MDSINE2
Language:Python
krisrs1128/metaomic_tutorials
Working through a few pipelines.
Language:Shell3 0
krisrs1128/multiomics_data
krisrs1128/personal-site
Language:TeX
krisrs1128/portfolio_site_s22
Language:HTML3 0
krisrs1128/portfolio_site_s22-builds
3 0
krisrs1128/stat679_f22
Language:HTML
krisrs1128/stat679_notes
Language:HTML3 0
krisrs1128/stat679_test
Language:HTML3 09
krisrs1128/test_site
Language:JavaScript3 0
krisrs1128/thor_interactions
3 0
krisrs1128/winter_school_2021
3 0
krisrs1128/winter_school_code
Language:R