Pinned Repositories
abdiv
Alpha and beta diversity measures for community ecology
brocc
Consensus taxonomy assignment for short reads (great for fungi)
kylesthesis
PhD thesis on mediated spin-orbit coupling in acetylene
pheatbuilder
R library to build a heatmap in stages
polyafit
Fit data to a multivariate Polya (a.k.a. Dirichlet-multinomial) distribution
q2-brocc
QIIME 2 plugin for the BROCC taxonomic classifier
qiimer
Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R
taxafmt
usedist
Functions for distance matrix objects in R.
unassigner
Type strain identification for 16S reads
kylebittinger's Repositories
kylebittinger/usedist
Functions for distance matrix objects in R.
kylebittinger/abdiv
Alpha and beta diversity measures for community ecology
kylebittinger/brocc
Consensus taxonomy assignment for short reads (great for fungi)
kylebittinger/polyafit
Fit data to a multivariate Polya (a.k.a. Dirichlet-multinomial) distribution
kylebittinger/q2-brocc
QIIME 2 plugin for the BROCC taxonomic classifier
kylebittinger/metagenomics-workshop
kylebittinger/pheatbuilder
R library to build a heatmap in stages
kylebittinger/biocode-review
Code review group - schedule and files
kylebittinger/EPID674_003_taxonomy
kylebittinger/flactrac
Flac music library management
kylebittinger/kylemisc
A few utility functions in R
kylebittinger/microbial-genomes-and-metagenomes
kylebittinger/neonatal-gut-colonization
Analysis source code for "Bacterial colonization reprograms the neonatal gut metabolome"
kylebittinger/taxafmt
kylebittinger/bilateria
Code for generating figures and statistics for bilaterian animal microbiome project
kylebittinger/decision-trees-tutorial
kylebittinger/EPID674_004_phylogeny
kylebittinger/EPID674_011_study-design
kylebittinger/example-shotgun-analysis
kylebittinger/heyfastq
FASTQ utilities in pure python with no dependencies
kylebittinger/ITS_primer_trim
kylebittinger/microbiome-data-science
Materials for Microbiome Data Science course, Spring 2024
kylebittinger/mirix-paper
kylebittinger/mouse_vendors_dataset
kylebittinger/okfasta
Completely superfluous FASTA utility programs in Python
kylebittinger/setreuler
kylebittinger/somanytaxa
kylebittinger/stackebrandtcurves
kylebittinger/tablemusthave
Define and check constraints for data tables
kylebittinger/wheelgame