lauraluebbert

cellxgene-census

CZ CELLxGENE Discover Census

bustools

Tools for working with BUS files

confocal_z-stack_analysis

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.

delphy_workflows

grubClub

Printed circuit board and 3D-printed arena designs for grubClub

lauraluebbert

transcriptomics-over-time

Automatically generates plots showing the number of studies using transcriptomics technologies over time.

gget

🧬 gget enables efficient querying of genomic reference databases

kallisto

Near-optimal RNA-Seq quantification

LSCHWCP_2023

Identification of viral RNA in single-cell RNA sequencing data

lauraluebbert/grubClub

Printed circuit board and 3D-printed arena designs for grubClub

lauraluebbert/confocal_z-stack_analysis

Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.

lauraluebbert/bustools

Tools for working with BUS files

lauraluebbert/delphy_workflows

lauraluebbert/lauraluebbert

lauraluebbert/transcriptomics-over-time

Automatically generates plots showing the number of studies using transcriptomics technologies over time.

lauraluebbert/.github

lauraluebbert/BI-BE-CS-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

lauraluebbert/bioconda-recipes

Conda recipes for the bioconda channel.

lauraluebbert/cellxgene-census

CZ CELLxGENE Discover Census

lauraluebbert/Chen_Institute_DataSAI_for_Neuroscience

lauraluebbert/epi_image_analysis

lauraluebbert/IBM_Prof_Data_Science

lauraluebbert/qcbc

lauraluebbert/ThorImage-Sync_2P-analysis

Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.

lauraluebbert/DnaChisel

:pencil2: A versatile DNA sequence optimizer

lauraluebbert/kallisto

Near-optimal RNA-Seq quantification

lauraluebbert/PhD_thesis

Code to reproduce all figures included in my Ph.D. thesis not previously published in papers.

lauraluebbert/test_gget_alphafold

lauraluebbert/TL_2023

lauraluebbert/US_gun_violence