Issues
- 2
ConnectionResetError(104, 'Connection reset by peer') when using cellxgene_census.get_anndata
#1260 opened by xshaaaa - 3
TimeoutError with cellxgene_census.get_anndata()
#1253 opened by LysSanzMoreta - 11
- 11
Bump tiledbsoma version on builder to 1.12.3
#1243 opened by ivirshup - 5
cellxgene-census times out running through a proxy server
#1256 opened by kgweiss - 0
Add live Census tests for PyTorch loaders
#1222 opened by ebezzi - 1
[pytorch] Add encoders for X
#1219 opened by ebezzi - 0
tools/census_contrib/pyproject.toml is super out of date
#1254 opened by ivirshup - 3
Add function for listing available h5ads for download
#1251 opened by ivirshup - 0
[misc] user-agent tagging in R
#1249 opened by pablo-gar - 8
3137 illegal hardware instruction (core dumped) python
#1121 opened by Mnikley - 5
Consider adding implementing a data distribution sensitive shuffling algorithm for dataloader libraries
#1146 opened by prathapsridharan - 4
Draft schema for `collection_doi_label` of `census["census_info"]["dataset"]`
#1179 opened by pablo-gar - 1
Bulk download h5ad data with filters [R]
#1217 opened by myushen - 4
- 2
Publish Census LTS release, June 2024
#1139 opened by pablo-gar - 2
Execution Time for highly_variable_genes Function
#1242 opened by ckrilow - 15
Cannot run open_soma() from Europe server
#1174 opened by Alex2975 - 1
- 0
Support numpy 2
#1240 opened by ivirshup - 0
vignette links broken
#1145 opened by jahilton - 1
Do not hardcode bucket names in the Census codebase
#1181 opened by ebezzi - 9
pip install problems
#1218 opened by Sankar-Gollapudi - 5
What is the difference between tissue and tissue_general
#1216 opened by Alex2975 - 1
get_census_version_directory() has `do_not_delete` key, which isn't documented or in the type definitions
#1204 opened by ivirshup - 1
Validate census version for embeddings
#1202 opened by ivirshup - 0
Embeddings notebook typo leads to saving scvi embedding to `adata.obsm["geneformer"]`
#1206 opened by ivirshup - 0
Implement `collection_doi_label` in builder
#1180 opened by pablo-gar - 7
How to download and use local soma directory from cellxgene_census.open_soma()?
#1201 opened by Alex2975 - 0
- 1
Missing column in docs for cellxgene_census schema
#1198 opened by emdann - 3
- 4
Can we use soma_joinid as cell_id
#1195 opened by Alex2975 - 4
Can't fiind dataset in API with dataset_id from browser
#1175 opened by mengerj - 0
ExperimentDataPipe should record the iterated joinids
#1182 opened by ebezzi - 0
- 4
Incorrect size of result when passing `obs_coords`
#1157 opened by ivirshup - 1
- 0
Add dev dependencies to pyproject.toml
#1148 opened by ivirshup - 5
- 0
- 0
Update embedding notebooks with new models for LTS
#1143 opened by pablo-gar - 0
- 0
Train and release scVI on LTS candidate
#1141 opened by pablo-gar - 0
- 0
Add tests and error checking to custom encoders PR
#1133 opened by pablo-gar - 0
- 0
- 0
mistake
#1110 opened by mmdanziger - 0
Add documentation to aid the developer on development and operations for census builder and api
#1109 opened by prathapsridharan