Pinned Repositories
2016-iscb-dc-rsg-workshop-presentation
ISCB DC RSG 2016 Workshop Presentation: Co-expression network analysis using RNA-Seq data
anki-chinese
Generate Anki vocab decks from Chinese texts.
bioinformatics-conf-vids
List of conferences with talk videos posted online
cats
cat for sequence files.
dotfiles
My dotfiles.
labnote
A light-weight HTML lab notebook generator
network-biology-study-group
Notes and code from a network biology study group at UMD.
nih-byob-intro
NIH Bring Your Own Bioinformatics (NIH BYOB) Introduction
pyopenjpeg
JPEG 2000 in Python
trump-world
TrumpWorld data exploration (RMarkdown/R/igraph)
khughitt's Repositories
khughitt/dotfiles
My dotfiles.
khughitt/labnote
A light-weight HTML lab notebook generator
khughitt/bioinformatics-conf-vids
List of conferences with talk videos posted online
khughitt/anki-chinese
Generate Anki vocab decks from Chinese texts.
khughitt/cats
cat for sequence files.
khughitt/EuPathDB
EuPathDB recipe for the Bioconductor AnnotationHub
khughitt/recipe-mygene-info
MyGene.info Gene Metadata Recipe
khughitt/snakes
Data integration and machine learning pipeline built on Snakemake
khughitt/annotables
R data package for annotating/converting Gene IDs
khughitt/ansi-art
C++ ANSIš„Art Renderer
khughitt/aoc22
Advent of Code 2022 Solutions
khughitt/frictionless-py
Data management framework for Python that provides functionality to describe, extract, validate, and transform tabular data
khughitt/GEOquery
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
khughitt/GVHD-SingleCell
khughitt/hmcl-drug-screen-pipeline
Multpile Myeloma NCATS MIPE 4.0 Drug Screen Dataset Pipeline
khughitt/mesa
Mesa is an open-source Python library for agent-based modeling, ideal for simulating complex systems and exploring emergent behaviors.
khughitt/missMethods
Methods for Missing Data
khughitt/mm30-geo-data-pipeline
MM30 GEO dataset preparation pipeline
khughitt/mm30-shiny
MM30 Shiny UI
khughitt/nguyen23-crispr-guided-multiomics
Transcriptomics and phosphoproteomics analysis code for "CRISPR-guided multiomics unveils direct mTOR inhibition of Hippo signaling through CDCP1" (Nguyen et al., 2023)
khughitt/quanteda
An R package for the Quantitative Analysis of Textual Data
khughitt/recipe-mesh-names
Medical Subject Headings (MeSH) ID/name data package recipe
khughitt/sioyek
Sioyek is a PDF viewer designed for reading research papers and technical books.
khughitt/snakemake-feature-phenotype-associations
A Snakemake pipeline for inferring feature-phenotype associations for paired datasets.
khughitt/snakemake-fgsea
Snakemake Pipeline for Functional Enrichment Analysis using fgsea
khughitt/snakemake-pubtator-co-occurrence
Snakemake PubTator co-occurrence matrix construction pipeline
khughitt/snakemake-recount
Snakemake Recount2 Download Pipeline
khughitt/stanza
Official Stanford NLP Python Library for Many Human Languages
khughitt/textual-autocomplete
Easily add autocomplete dropdowns to your Textual apps
khughitt/three-lsystem