Pinned Repositories
2016-iscb-dc-rsg-workshop-presentation
ISCB DC RSG 2016 Workshop Presentation: Co-expression network analysis using RNA-Seq data
anki-chinese
Generate Anki vocab decks from Chinese texts.
bioinformatics-conf-vids
List of conferences with talk videos posted online
cats
cat for sequence files.
dotfiles
My dotfiles.
labnote
A light-weight HTML lab notebook generator
network-biology-study-group
Notes and code from a network biology study group at UMD.
nih-byob-intro
NIH Bring Your Own Bioinformatics (NIH BYOB) Introduction
pyopenjpeg
JPEG 2000 in Python
trump-world
TrumpWorld data exploration (RMarkdown/R/igraph)
khughitt's Repositories
khughitt/network-biology-study-group
Notes and code from a network biology study group at UMD.
khughitt/2016-iscb-dc-rsg-workshop-presentation
ISCB DC RSG 2016 Workshop Presentation: Co-expression network analysis using RNA-Seq data
khughitt/awesome-R
A curated list of awesome R packages, frameworks and software.
khughitt/crosstalk-demo
khughitt/knitrBootstrap
A framework to create bootstrap styled HTML reports from knitr Rmarkdown.
khughitt/ribosome_profiling
khughitt/slidify-annotation_enrichment_analysis
Journal club: Annotation Enrichment Analysis: An Alternative Method for Evaluating the Functional Properties of Gene Sets
khughitt/slidify-wgcna
Journal club presentation on Weighted Correlation Network Analysis (WGCNA)
khughitt/urban-data-dive
Urban Data Dive: How Better Data Can Reduce Domestic Violence
khughitt/brookings-ending-rural-hunger-hackathon-2015
Brookings Institute - Ending Rural Hunger Hackathon (2015)
khughitt/ete
ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of any type of hierarchical trees. This includes phylogenetic trees, clustering results and profile-based trees. It supports node annotation, programatic tree drawing, circular visualization, SVG, PNG and PDF image rendering, and more!
khughitt/eve
Ensemble Variant Detection (EVE)
khughitt/EXTREME
An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data
khughitt/helpmeviz-womens-empowerment
HelpMeViz Hackathon - 2014/06/28
khughitt/hidden-hunger-hackathon-2015
2015 HelpMeViz Vizathon: Hidden Hunger
khughitt/irefindex-ensembl-network
Simple script to parse iRefIndex PSI MITAB files and generate an ENSEMBL gene edge list
khughitt/knitcitations
Generate citations for knitr markdown and html files
khughitt/nerdcommenter
Vim plugin for intensely orgasmic commenting
khughitt/pacman
A package management tools for R
khughitt/pkgbuild
khughitt/ruffus
Ruffus is a lightweight python module for running computational pipelines.
khughitt/shiny-htmlwidget-example
Example of hosting a Shiny-like interactive plot on Github pages.
khughitt/slidify-co-expr_co-reg_relationship
Journal club: Quantifying the relationship between co-expression, co-regulation and gene function (Allocco et al. 2004)
khughitt/smooth.ratio
khughitt/sva-devel
khughitt/todotxt-machine
an interactive terminal based todo.txt file editor with an interface similar to mutt
khughitt/tritrypdb
A small collection of R functions for working with TriTrypDB data files.
khughitt/urban-data-camp_youth-jobs
#UrbanDataCamp: Using Data to Help Low-Income Youth Find Jobs
khughitt/Vim-R-plugin
Plugin to work with R (forked for development only)
khughitt/vim-textobj-underscore
Underscore text-object for Vim