Pinned Repositories
2016-iscb-dc-rsg-workshop-presentation
ISCB DC RSG 2016 Workshop Presentation: Co-expression network analysis using RNA-Seq data
anki-chinese
Generate Anki vocab decks from Chinese texts.
bioinformatics-conf-vids
List of conferences with talk videos posted online
cats
cat for sequence files.
dotfiles
My dotfiles.
labnote
A light-weight HTML lab notebook generator
network-biology-study-group
Notes and code from a network biology study group at UMD.
nih-byob-intro
NIH Bring Your Own Bioinformatics (NIH BYOB) Introduction
pyopenjpeg
JPEG 2000 in Python
trump-world
TrumpWorld data exploration (RMarkdown/R/igraph)
khughitt's Repositories
khughitt/nih-byob-intro
NIH Bring Your Own Bioinformatics (NIH BYOB) Introduction
khughitt/benchmark-compression
R/Python Data Compression Benchmark
khughitt/snakemake-feature-phenotype-correlations
A Snakemake pipeline for computing correlations within and between paired feature and phenotype datasets
khughitt/arrow
Apache Arrow is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. It also provides computational libraries and zero-copy streaming messaging and interprocess communication. Languages currently supported include C, C++, Java, JavaScript, Python, and Ruby.
khughitt/awesome-go
A curated list of awesome Go frameworks, libraries and software
khughitt/benchmark-correlation
R/Python correlation performance benchmarks
khughitt/bioconda-recipes
Conda recipes for the bioconda channel.
khughitt/bitwig.community
🚀 Bitwig linkpage / browser startpage with all important links. wow
khughitt/colorizer
A Vim plugin to colorize all text in the form #rrggbb or #rgb.
khughitt/cookiecutter-dev-rmd
A simple RMarkdown dev cookiecutter template for quickly testing out ideas / new packages / etc.
khughitt/cookiecutter-proj-notes
Project Notes Cookiecutter Template
khughitt/fasd
Command-line productivity booster, offers quick access to files and directories, inspired by autojump, z and v.
khughitt/fw-pipeline
Feature Weights Pipeline (dev)
khughitt/fzf-fasd
🌸 fzf + fasd integration
khughitt/gene-set-redundancy
Gene set redundancy analysis snakemake pipeline
khughitt/haishoku
A development tool for grabbing the dominant color or representative color palette from an image
khughitt/multi-mm
Multiple Multiple Myeloma Dataset Exploration
khughitt/neural-style
Neural style in TensorFlow! :art:
khughitt/one-dark
A collection of config files for applying the OneDark color scheme in Linux.
khughitt/pharmacogx-data-retrieval
A simple Snakemake-based pipeline for downloading and processing data from PharmacoGx.
khughitt/renv
renv: Project environments for R.
khughitt/rocker-versioned2
khughitt/shiny-fw
Feature weights shiny application
khughitt/snakemake-rna-secondary-pred
Snakemake pipeline to perform RNA secondard structure prediction for different genomics features
khughitt/snakes-cca
Snakes CCA Pipeline
khughitt/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
khughitt/sunpy-1.0-paper
The SunPy 1.0 Paper Repo
khughitt/syntastic
Syntax checking hacks for vim
khughitt/uwot
An R package implementing the UMAP dimensionality reduction method.
khughitt/visidata
A console spreadsheet tool for discovering and arranging data