laxmangene7

Changing-Row-Names-in-R

How row names in a table can be changed in R ?

Introgression-Mapping-using-Sequencing

Plant Breeder frequently uses alien introgression, i.e. utilizing valuable genes from the wild relatives to the cultivated crop varieties. Traditionally, the introgression of a piece or whole arm of alien chromosomes into the elite varities was confirmed using cytogenetic tools such as FISH and GISH. With the advent of new high-throughput sequencing technology, we can use sequencing of putative introgressed lines to confirm the introgressions. This pipeline uses some other pipelines and basic unix codes to map reads of the introssion lines to a combined reference genome i.e. reference generated through combining the reference genomes of both donor and the recepient.

laxmangene7

Config files for my GitHub profile.

Simple_Commands_For_Biologist

These simple linux commands are useful for biologist and other scientist whenever they need to work with larger datasets

Skim-Seq-Population-Genotyping

Genotyping a larger plant population using skim-sequencing such as Nextera approach has gained popularity these days. However, no proper analysis methods have been documented in public domain. This protocol describe how we call variants from skim-seq population which is based on the deep-sequencing of parental lines.

SkimSeq_Method

laxmangene7/Introgression-Mapping-using-Sequencing

Plant Breeder frequently uses alien introgression, i.e. utilizing valuable genes from the wild relatives to the cultivated crop varieties. Traditionally, the introgression of a piece or whole arm of alien chromosomes into the elite varities was confirmed using cytogenetic tools such as FISH and GISH. With the advent of new high-throughput sequencing technology, we can use sequencing of putative introgressed lines to confirm the introgressions. This pipeline uses some other pipelines and basic unix codes to map reads of the introssion lines to a combined reference genome i.e. reference generated through combining the reference genomes of both donor and the recepient.

laxmangene7/Skim-Seq-Population-Genotyping

Genotyping a larger plant population using skim-sequencing such as Nextera approach has gained popularity these days. However, no proper analysis methods have been documented in public domain. This protocol describe how we call variants from skim-seq population which is based on the deep-sequencing of parental lines.

laxmangene7/Changing-Row-Names-in-R

How row names in a table can be changed in R ?

laxmangene7/laxmangene7

Config files for my GitHub profile.

laxmangene7/Simple_Commands_For_Biologist

These simple linux commands are useful for biologist and other scientist whenever they need to work with larger datasets