Pinned Repositories
napari-clusters-plotter
A napari plugin for clustering objects according to their properties.
apoc
BIDS-training-2024
blog
Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.
devbio-napari
diffae
Official implementation of Diffusion Autoencoders
end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
organoid-segmentation-ML
Supplementary Material for the master thesis on segmentation of early mESC organoid 3D+time data with fluorescently labelled membranes
stardist
StarDist - Object Detection with Star-convex Shapes
lazigu's Repositories
lazigu/organoid-segmentation-ML
Supplementary Material for the master thesis on segmentation of early mESC organoid 3D+time data with fluorescently labelled membranes
lazigu/apoc
lazigu/blog
Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.
lazigu/end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
lazigu/stardist
StarDist - Object Detection with Star-convex Shapes
lazigu/BIDS-training-2024
lazigu/devbio-napari
lazigu/diffae
Official implementation of Diffusion Autoencoders
lazigu/napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
lazigu/napari-clusters-plotter
A plugin to use with napari for clustering objects according to their properties.
lazigu/napari-clusters-plotter-example-notebooks
This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage
lazigu/napari-layer-details-display
lazigu/napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
lazigu/napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
lazigu/stardist-napari
StarDist plugin for napari