lh3/hickit

Issues

• Can hickit deal with nanopore long reads and generate phasing results properly?

  #42 opened 15 days ago by Wong718
  1

• merge .allValidPairs of the same celltype cells to reconstructe 3D model

  #41 opened 3 months ago by zcq23
  0

• Working on my haploid dataset

  #3 opened 6 years ago by tarak77
  46

• hickit: main.c:103: main: Assertion `m' failed.

  #40 opened 3 months ago by zcq23
  0

• [E::hk_sd_ploidy_XY] multiple chr contain 'X' or 'Y' in names

  #39 opened 3 months ago by zcq23
  4

• On the issue of duplicated chromosomes

  #38 opened a year ago by HanwenZhu98
  1

• How to Call Tads

  #36 opened a year ago by licx11
  0

• Help with bulk Hi-C data

  #37 opened a year ago by jeff-godwin
  1

• Gaining intuition/information about script key word arguments.

  #35 opened 2 years ago by Xparx
  0

• hickit-gl --view generate very small figure

  #34 opened 2 years ago by Xparx
  3

• Dip-c included ?

  #33 opened 2 years ago by Xparx
  3

• Can we reconstruct the 3dg format file without merging bead

  #32 opened 2 years ago by 1eilei
  6

• hickit-gl Error

  #31 opened 2 years ago by 1eilei
  0

• Clarification on `seg` format

  #30 opened 3 years ago by b2jia
  3

• Possibility to use hickit for bulk Hi-C modelling?

  #29 opened 3 years ago by TerezaClarence
  1

• output missing coordinates

  #28 opened 4 years ago by lidaof
  8

• hickit.js error

  #27 opened 4 years ago by shiyi-pan
  4

• Obtaining genome wide contact matrix file in .npy/related format?

  #9 opened 6 years ago by tarak77
  24

• help with understanding how the coordinates are updated

  #26 opened 4 years ago by tarak77
  4

• hickit.js:457: Error

  #24 opened 5 years ago by chenggang108
  35

• _hic_resolve_frag: rev = !rev

  #25 opened 4 years ago by xiaqimin
  3

• hk_parse_seg error

  #21 opened 6 years ago by bredeson
  9

• Where can I find the algorithmic details?

  #22 opened 5 years ago by renxwise
  7

• Do you recommend bwa mem with or without the -5 option for aligning normal hi-c data

  #23 opened 5 years ago by jelber2
  2

• Error while trying to convert 3dg file

  #20 opened 6 years ago by DS57
  2

• how to calculate RMSD using hickit

  #18 opened 6 years ago by zhang-jiankun
  2

• What are the essential differences between bulk hic and single cell hic using hickit to build 3D model

  #17 opened 6 years ago by kainblue
  0

• compiling error

  #16 opened 6 years ago by zhang-jiankun
  5

• allotetraploid genome with HiC

  #15 opened 6 years ago by mictadlo
  0

• Forgot to mention the sex of the samples

  #14 opened 6 years ago by tarak77
  6

• Memory requirement and running on cluster?

  #13 opened 6 years ago by tarak77
  4

• /usr/bin/env: k8: No such file or directory?

  #11 opened 6 years ago by tarak77
  2

• Analyzing diploid mESC data from Nagano et al. (2017)

  #5 opened 6 years ago by tarak77
  25

• Remove unnecessary null pointer checks

  #2 opened 6 years ago by elfring
  1

• Completion of error handling

  #1 opened 6 years ago by elfring
  1