linghuichen

linghuichen's Stars

• adaptyvbio/ProteinFlow

  Versatile computational pipeline for processing protein structure data for deep learning applications.

  Language:Python22814

• Ligo-Biosciences/AlphaFold3

  Open source implementation of AlphaFold3

  Language:Python76355

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.1k134

• Profluent-AI/proseLM-public

  Adapting protein language models for structure-conditioned design

  312

• levinthal/Pallatom

  Language:Python463

• sh-lee-prml/PeriodWave

  The official Implementation of PeriodWave and PeriodWave-Turbo

  1157

• AspirinCode/awesome-AI4MolConformation-MD

  List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning

  10111

• epang-ucas/Cell-Graph-Compass

  Code repository for Cell-Graph Compass: Modeling Single Cells with Graph Structures Foundation Models

  Language:Python3

• ShiArthur03/ShiArthur03

  Language:MATLAB10.4k1.9k

• guanjq/targetdiff

  The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

  Language:Python20633

• jasonkyuyim/multiflow

  Language:Python1065

• luost26/diffab

  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)

  Language:Python26941

• smsaladi/pymol_viridis

  Colorblind-friendly, perceptually uniform palettes for pymol

  Language:Python183

• 2noise/ChatTTS

  A generative speech model for daily dialogue.

  Language:Python31.1k3.4k

• prescient-design/walk-jump

  Official repository for discrete Walk-Jump Sampling (dWJS)

  Language:JavaScript445

• seanrjohnson/protein_gibbs_sampler

  Gibbs sampling for generating protein sequences

  Language:Python467

• ml4bio/RiboDiffusion

  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

  Language:Python275

• kirjner/GGS

  This repository implements Gibbs sampling with Graph-based Smoothing

  Language:Python305

• Layne-Huang/PMDM

  Language:Python9521

• google-deepmind/nuclease_design

  ML-guided enzyme engineering

  Language:Jupyter Notebook3511

• hpcaitech/Open-Sora

  Open-Sora: Democratizing Efficient Video Production for All

  Language:Python21.7k2.1k

• Saoge123/PocketFlow

  an autoregressive flow model incorporated with chemical acknowledge for generating drug-like molecules inside protein pockets

  Language:Python10112

• baker-laboratory/rf_diffusion_all_atom

  Public RFDiffusionAA repo

  Language:Python28444

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python612108

• gcorso/DiffDock

  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

  Language:Python1.1k254

• DreamFold/FoldFlow

  FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation

  Language:Jupyter Notebook1618

• luo-group/ConFit

  Language:Python238

• violet-sto/HN-GFN

  Official implementation of NeurIPS'23 paper "Sample-efficient Multi-objective Molecular Optimization with GFlowNets"

  Language:Python142

• microsoft/protein-frame-flow

  Fast protein backbone generation with SE(3) flow matching.

  Language:Python20813

• felixjwong/antibioticsai

  Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"

  Language:Jupyter Notebook8412