Plascope - Centrifuge error
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jpaganini commented
Centrifuge does not find the correct perl installation in the HPC. Therefore Plascope does not produce plasmid predictions. See error below:
Cwd.c: loadable library and perl binaries are mismatched (got handshake key 0xde00080, needed 0xdb00080)
Temporary fix:
Modify the PERL5LIB path in .bashrc file. Add following line:
export PERL5LIB=/hpc/dla_mm/jpaganini/data/miniconda3/envs/plascope_ec_lv/lib/perl5/5.22.0/
This directs centrifuge to the correct perl libraries in the plascope_ec_ev (the one created for running the plascope within the EC)
(Each user will have to modify their own path to the miniconda or conda installation)