lishen
I'm an academic researcher with many years of experience developing machine learning algorithms and bioinformatic software and analyzing genomic data.
Icahn School of Medicine at Mount SinaiNew York City
Pinned Repositories
hyperopt-sklearn
Hyper-parameter optimization for sklearn
BayesnetLearning_GeneRegulation
Bayesian network learning of gene regulatory rules
dream2016_dm
My entry to the DREAM2016 digital mammography challenge for breast cancer diagnosis
end2end-all-conv
Deep Learning to Improve Breast Cancer Detection on Screening Mammography
machine_learning_edu
Machine learning education
Multiclass_OutputCoding
A multi-class classification strategy using error-correction output-coding.
my-contributions-to-open-ml
A collection of my contributions to open-source machine learning community
OncoData_Public
Python wrappers for dicom conversion.
ngsplot
Quick mining and visualization of NGS data by integrating genomic databases
lishen's Repositories
lishen/end2end-all-conv
Deep Learning to Improve Breast Cancer Detection on Screening Mammography
lishen/dream2016_dm
My entry to the DREAM2016 digital mammography challenge for breast cancer diagnosis
lishen/my-contributions-to-open-ml
A collection of my contributions to open-source machine learning community
lishen/machine_learning_edu
Machine learning education
lishen/Multiclass_OutputCoding
A multi-class classification strategy using error-correction output-coding.
lishen/OncoData_Public
Python wrappers for dicom conversion.
lishen/SP500_ML
Forecasting S&P500 log returns with machine learning
lishen/BayesnetLearning_GeneRegulation
Bayesian network learning of gene regulatory rules
lishen/BooleanNet_PredictPhenotype
A Boolean network model to predict the phenotype of a biological network
lishen/CapsNet-Keras
A Keras implementation of CapsNet in NIPS2017 paper "Dynamic Routing Between Capsules". Now test error ＝ 0.34%.
lishen/cs231n.github.io
Public facing notes page
lishen/ddsm
Digital Database for Digital Mammography Software
lishen/ddsmtools
lishen/DDSMUtility
This is a utility written by me to greatly simplify downloading, converting, viewing and extracting annotations from the Digital Database for Screening Mammography (DDSM) database available here: http://marathon.csee.usf.edu/Mammography/Database.html
lishen/dm-python-example
This is an example of a DM Challenge submission in Python.
lishen/frcnn_cad
Computer aided detection using Faster-RCNN
lishen/hyperas
Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization
lishen/hyperopt
Distributed Asynchronous Hyperparameter Optimization in Python
lishen/hyperopt-sklearn
I have made contributions in this forked version and merged all commits back to the original repository
lishen/ImReg
Image Registration Algorithms
lishen/keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.
lishen/ljpeg-ddsm
lishen/LogisticRegression_CancerClassification
Dimension-reduction based logistic regression algorithm used to predict cancer types.
lishen/MixtureModel_GeneClustering
Gene clustering based on a mixture model of joint probabilistic distribution of array signals and DNA sequences
lishen/scripts-ubuntu-debian
Scripts for Ubuntu/Debian
lishen/spatial-transformer-network
A Tensorflow Implementation of Spatial Transformer Networks
lishen/STAR-genome-browser
lishen/STN.keras
Implementation of spatial transformer networks (STNs) in keras 2 with tensorflow as backend.