shenlab-sinai/ngsplot

Issues

• flat NGS plot

  #99 opened 4 months ago by tsharma017
  0

• Issue with Tair10 Genome

  #96 opened 2 years ago by jjp55
  0

• Maize genome issues

  #97 opened 2 years ago by Raoyugithub
  0

• ngsplot heatmap

  #95 opened 3 years ago by wang1ei
  0

• how to set the color in heatmap

  #94 opened 3 years ago by pangxueyu233
  0

• ngsplotdb.py install not working

  #93 opened 3 years ago by niekwit
  0

• Conda package

  #74 opened 7 years ago by sebastian-luna-valero
  17

• Genomic regions to plot in strand-specific

  #60 opened 8 years ago by tamarsegal
  4

• Genelist questions

  #91 opened 5 years ago by hugokitano
  0

• extension of the genome for mm10

  #90 opened 5 years ago by pangxueyu233
  0

• Issue when running mm10 using custom bed file

  #89 opened 5 years ago by saimukund20
  0

• draw multiplot of each group

  #88 opened 5 years ago by neptuneyt
  1

• ngsplot error

  #68 opened 7 years ago by amitpande74
  3

• length of 'dimnames' [1] not equal to array extent

  #87 opened 6 years ago by yeswzc
  0

• ngsplotdb.py install error

  #86 opened 6 years ago by soleilll
  1

• Error with own regions

  #85 opened 6 years ago by mpaya
  0

• headerIndexBam ... indexBam -> sapply -> sapply -> lapply -> FUN -> .Call

  #84 opened 6 years ago by singhsk2622
  0

• .bam files originated from .bedpe as input

  #83 opened 6 years ago by vidaletal
  1

• ngs.plot.r

  #78 opened 7 years ago by Liyi56
  2

• [ngs.plot.r] average plots around TSS look different when i plot with "tss" and "genebody"

  #48 opened 9 years ago by ajjeon
  1

• Configuring variables...Error in if (!all(genome.coord$start <= genome.coord$end)) { : missing value where TRUE/FALSE needed

  #82 opened 6 years ago by vidaletal
  1

• "-r TSS shape" with -r bed option (Specific TSS on a bed file)

  #81 opened 6 years ago by LucaTucciarone
  0

• Flat Average Profile Plot

  #80 opened 7 years ago by mmYeung
  0

• Questions about gene list?

  #79 opened 7 years ago by a091601
  0

• BED vs BAM

  #70 opened 7 years ago by gireeshkbogu
  1

• Scaling for heatmaps

  #77 opened 7 years ago by ikremsky
  1

• confused about length normalization in custom regions

  #76 opened 7 years ago by gangxuehzau
  0

• specifying different subsets for the same config file

  #75 opened 7 years ago by igordot
  0

• How can I scale the plots of different histone marks

  #71 opened 7 years ago by gireeshkbogu
  1

• how can i scale y limit (range) ?

  #73 opened 7 years ago by ddhb
  0

• flat plots in ngsplots

  #69 opened 7 years ago by ShivPet
  5

• Empty plot_chnaged the bam file_still got empty plot

  #72 opened 7 years ago by mforoozani1
  0

• Reads mapping to mitochondrial genes are not counted when BAM file uses Ensembl chromsome names

  #59 opened 9 years ago by jdblischak
  1

• isSecondaryAlignment error

  #67 opened 8 years ago by girdhar3
  1

• s.pombe genome

  #66 opened 8 years ago by rojasp
  0

• Using more than one replicate

  #65 opened 8 years ago by kashiff007
  0

• Issues plotting read density in peak region

  #57 opened 9 years ago by shabs24
  1

• Errors while running ngsplot

  #64 opened 8 years ago by abhisheksinghnl
  0

• rn6 database

  #63 opened 8 years ago by abhisheksinghnl
  0

• hisat2 aligner

  #62 opened 8 years ago by ashcass
  0

• Use .cnt file to change library size normalization?

  #61 opened 8 years ago by mkrause-MPI
  0

• subread aligner problem

  #58 opened 9 years ago by pedrocrisp
  4

• Aligner

  #56 opened 9 years ago by KGillinder
  0

• BWA-MEM alignment

  #55 opened 9 years ago by beemo45
  0

• cluster labels

  #54 opened 9 years ago by igordot
  0

• R 3.2 Bioconductor 3.2 updated problem

  #51 opened 9 years ago by portiaxu
  4

• -RR (reduce ratio) parameter

  #53 opened 9 years ago by igordot
  3

• using custom gene list

  #52 opened 9 years ago by igordot
  1

• Plotting only top 1000 rows in a heatmap

  #50 opened 9 years ago by aditiq
  1

• replot.r fail on test

  #47 opened 10 years ago by EricDeveaud
  2