liujilei156231

liujilei156231's Stars

• ggerganov/llama.cpp

  LLM inference in C/C++

  Language:C++68.4k5494.1k9.8k

• xtekky/gpt4free

  The official gpt4free repository | various collection of powerful language models

  Language:Python62.2k4841.4k13.4k

• facebookresearch/faiss

  A library for efficient similarity search and clustering of dense vectors.

  Language:C++31.6k4792.5k3.7k

• THUDM/ChatGLM2-6B

  ChatGLM2-6B: An Open Bilingual Chat LLM | 开源双语对话语言模型

  Language:Python15.7k1326151.9k

• hila-chefer/Transformer-Explainability

  [CVPR 2021] Official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks.

  Language:Jupyter Notebook1.8k2163241

• hbctraining/In-depth-NGS-Data-Analysis-Course

  Language:HTML438455269

• biobakery/MetaPhlAn

  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

  Language:Python3052020586

• MAGICS-LAB/DNABERT_2

  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  Language:Shell2791011665

• kyclark/biofx_python

  Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

  Language:Python206116570

• broadinstitute/ichorCNA

  Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

  Language:R1692113288

• AlexandrovLab/SigProfilerExtractor

  SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

  Language:Python1542221352

• CahanLab/singleCellNet

  SingleCellNet: classify single cells across species and platforms

  Language:R13175229

• EGA-archive/ega-download-client

  A Python-based EGA download client

  Language:Python94915452

• labomics/midas

  Language:Python412127

• adoebley/Griffin

  A flexible framework for nucleosome profiling of cell-free DNA

  Language:Python2541616

• pfizer-opensource/bigwig-loader

  A fast dataloader for bigwig files made for machine learning

  Language:Python24501

• sdchandra/CNAclinic

  Language:R225817

• jlakkis/sciPENN

  Language:Python15152

• epifluidlab/cragr

  R package for CRAG

  Language:R11322

• cancer-genomics/gemini_wflow

  Language:R10230

• epigen/LIQUORICE

  A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies

  Language:Python107105

• epifluidlab/FinaleMe

  Language:Java91102

• kaistomics/cfWGS

  Language:Python6210

• WlabUCLA/BRcfDNA-Seq

  Language:Shell610

• ParkerICI/MORRISON-1-public

  public facing repository for processed data related to MORRISON 1

  5401

• Honchkrow/cfDNAReferences

  Cell Free DNA Analysis References

  2201

• jknightlab/TAPS-pipeline

  Codes for processing of methylation data generated using the TAPS method

  Language:Shell2400

• Shicheng-Guo/mDELLFI

  low-pass WGBS based DELFI

  Language:R210

• lingliao/cfdna-wgs

  Language:HTML110

• miramou/cfrna_pipeline

  Language:Python1110