liusihan/seGMM

Issues

• When running: plink --vcf my.vcf --make-bed --out sex/plink An error was occured, please check the parameters!

  #7 opened a year ago by UndressK
  9

• Use `--allow-extra-chr` in plink to accept chrX ALT contigs in VCF

  #6 opened a year ago by Faizal-Eeman
  3

• error in last step

  #16 opened 4 months ago by sunqiangzai
  1

• seGMM suitability for imputated genotype arrays

  #15 opened 5 months ago by nickhir
  1

• Error at GMM model

  #14 opened 8 months ago by Lucianabarros
  1

• confusing result：sry high coverage but female？

  #13 opened 10 months ago by feihongloveworld
  1

• seGMM could not be used on those bams aligned to ucsc.hg19.fasta which chromename without prefix "chr" ?

  #12 opened 10 months ago by feihongloveworld
  0

• Mistake in code that classifies XXX

  #11 opened a year ago by madleina
  1

• Error

  #10 opened a year ago by Abusamra
  1

• SegMM running forever

  #9 opened a year ago by gopisiva1616
  1

• Error in if (G[1] == 1) { : missing value where TRUE/FALSE needed

  #8 opened a year ago by robert-altwasser
  0

• Working with non Human data

  #5 opened 2 years ago by murielgb
  2

• Not finding expected karyotype

  #4 opened 2 years ago by Fred-07
  4

• Very different values with WES data

  #2 opened 2 years ago by Fred-07
  5

• paste XH.sorted.txt with unsorted Xmap.txt results in error results

  #3 opened 2 years ago by ShannonDaddy
  2

• Solving environment: failed with initial frozen solve. Retrying with flexible solve.

  #1 opened 2 years ago by dpalmos
  1