lizard1111

lizard1111's Stars

• ml-explore/mlx

  MLX: An array framework for Apple silicon

  Language:C++17.9k1k

• ANTsX/ANTsPyNet

  Pre-trained models and utilities for deep learning on medical images in Python

  Language:Python20229

• ucla-brain/image-preprocessing-pipeline

  Python code for stitching and image enhancement

  Language:C++93

• miykael/gif_your_nifti

  How to create fancy GIFs from an MRI brain image

  Language:Python12034

• pyqtgraph/pyqtgraph

  Fast data visualization and GUI tools for scientific / engineering applications

  Language:Python3.9k1.1k

• marrlab/BaSiC

  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images

  Language:MATLAB5414

• abria/TeraStitcher

  A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

  Language:C++8332

• SebastienTs/deStripe

  This macro implements an image filter meant to mitigate close to parallel attenuation stripes, such as the ones typically observed in (fixed) light sheet microscopy.

  3

• mclaughlinliam3/ABBA_Coregistration_Analysis_Tools

  Scripts to aid data pre- and post-processing when coregistering 3D mouse brains with Nicolas Chiaruttini's ABBA tool

  Language:Python1

• JaneliaSciComp/bigstream

  Tools for distributed alignment of massive images

  Language:Jupyter Notebook7721

• PreibischLab/bigdataviewer-core-movie

  ImgLib2-based viewer for registered SPIM stacks and more

  Language:Java3

• lmbneuron/D-LMBmap

  Language:Jupyter Notebook365

• RoysamLab/whole_brain_analysis

  Language:Python115

• HumanSignal/labelImg

  LabelImg is now part of the Label Studio community. The popular image annotation tool created by Tzutalin is no longer actively being developed, but you can check out Label Studio, the open source data labeling tool for images, text, hypertext, audio, video and time-series data.

  Language:Python23k6.3k

• HumanSignal/label-studio

  Label Studio is a multi-type data labeling and annotation tool with standardized output format

  Language:JavaScript19.8k2.4k

• Swordfish90/cool-retro-term

  A good looking terminal emulator which mimics the old cathode display...

  Language:QML22.5k857

• ian-coccimiglio/napari-segment-everything

  A Napari SAM plugin to segment everything in your image (not just some things)

  Language:Python1

• brainglobe/brainglobe-template-builder

  Build unbiased anatomical templates from individual images

  Language:Python8

• saalfeldlab/n5-viewer

  BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

  Language:Java1911

• saalfeldlab/paintera

  Language:Java10017

• sanderslab/magellanmapper

  MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification

  Language:Python213

• ANTsX/ANTsPy

  A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

  Language:Python662164

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.5k252

• BlueBrain/NeuroMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

  Language:Python12927

• bene51/3Dscript

  Create 3D/4D animations using a natural language-based syntax

  Language:Java5812

• linum-uqam/m2m

  LINUM's Meso to Macro Toolkit

  Language:Python4

• saalfeldlab/bigwarp

  A tool for manual pointwise deformable registration using bigdataviewer.

  Language:Java2714

• bigdataviewer/bigdataviewer-core

  ImgLib2-based viewer for registered SPIM stacks and more

  Language:Java3735

• brainglobe/brainglobe-workflows

  Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.

  Language:Python92

• jerrywei2801/LSFM-destriping

  Stripe artifacts elimination of LSFM images using deep learning method

  Language:Python2