Pinned Repositories
blenderVR
Virtual reality running in blender, using single mouse connected via USB using NI VISA driver
Bruker_PrairieLink
Stream data from PrairieView into MATLAB to allow online processing and analysis
dftreg
python module for image sequence registration
Naparm
Control and design of two-photon photostimulation experiments
PyBehaviour
Software and hardware for control of operant conditioning behavioural experiments
ReadYAML
Read YAML files into MATLAB as struct
SLMPhaseMaskMaker
Implements a weighted GS algorithm using Martin Perssons HOTlab DLL
SLMPhaseMaskMaker3D
Generates phase masks for display on an SLM using a weighted GS algorithm
SLMTransformMaker3D
Calculate the transform required to map 2P imaging space onto SLM space
STAMovieMaker
Generate stimulus triggered average movies and images from activity imaging data
llerussell's Repositories
llerussell/ReadYAML
Read YAML files into MATLAB as struct
llerussell/SLMPhaseMaskMaker3D
Generates phase masks for display on an SLM using a weighted GS algorithm
llerussell/Naparm
Control and design of two-photon photostimulation experiments
llerussell/Bruker_PrairieLink
Stream data from PrairieView into MATLAB to allow online processing and analysis
llerussell/PyBehaviour
Software and hardware for control of operant conditioning behavioural experiments
llerussell/SLMPhaseMaskMaker
Implements a weighted GS algorithm using Martin Perssons HOTlab DLL
llerussell/STAMovieMaker
Generate stimulus triggered average movies and images from activity imaging data
llerussell/dftreg
python module for image sequence registration
llerussell/SLMTransformMaker3D
Calculate the transform required to map 2P imaging space onto SLM space
llerussell/Bruker_MarkPoints
llerussell/paq2py
Read paq file (from PackIO) into python
llerussell/cellposeForNaparm
a little utility to generate cellpose rois for use with naparm
llerussell/MONPangle
llerussell/SLMPhaseMaskMaker_PythonCUDA
Generate SLM phase masks (Python, CUDA)
llerussell/Suite2P
Tools for processing 2P recordings
llerussell/TriggerBuilder
llerussell/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
llerussell/cellpose
a generalist algorithm for cellular segmentation
llerussell/constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab
llerussell/Constrained_NMF
Python implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
llerussell/GenerateHologramCUDA
llerussell/ntc_CNMF
source separation
llerussell/PackIO
Electrophysiology and synchronization with National Instruments cards
llerussell/RotaryEncoderVI
llerussell/sima
Python package for analysis of dynamic fluorescence microscopy data
llerussell/SLMPhaseMaskMaker_LightPipes
Generate SLM phase masks (MATLAB)
llerussell/SLMTransformMaker
Calculate the transform required to map 2P imaging space onto SLM space
llerussell/sta
Standalone python module for performing triggered averaging
llerussell/UserTools
llerussell/website
personal website