lucas-bishop

lucas-bishop's Stars

• fivethirtyeight/data

  Data and code behind the articles and graphics at FiveThirtyEight

  Language:Jupyter Notebook16.8k1.3k16310.9k

• smogon/pokemon-showdown

  Pokémon battle simulator.

  Language:TypeScript4.8k1697672.8k

• bioinformatics-centre/kaiju

  Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

  Language:C2651427168

• MGXlab/CAT_pack

  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

  Language:Python188910130

• MaestSi/MetONTIIME

  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework

  Language:Nextflow76510717

• SchlossLab/mikropml

  User-Friendly R Package for Supervised Machine Learning Pipelines

  Language:R53915117

• Shians/Glimma

  Glimma R package

  Language:R5076610

• s4hts/HTStream

  A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

  Language:C++4981339

• SchlossLab/Topcuoglu_ML_mBio_2020

  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

  Language:R274914

• DeniRibicic/q2ONT

  Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2

  Language:Shell262811

• SchlossLab/new_project

  Language:Makefile1812213

• colindaven/guppy_on_slurm

  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

  Language:Shell15235

• nadir2115/Unsupervised-ML-NBA-2018-Player-Similarity

  Unsupervised Machine Learning project for evaluating 2017-18 NBA player similarity

  Language:HTML134

• SchlossLab/mikropml-snakemake-workflow

  Snakemake template for building reusable and scalable machine learning pipelines with mikropml

  Language:Python118223

• wclose/viralMetagenomicsPipeline

  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles

  Language:Shell118

• SchlossLab/snakemake_cluster_tutorial

  Brief tutorial for using Snakemake to create and submit jobs on a HPC cluster.

  Language:Python9311

• krmaas/bioinformatics

  random collection of scripts used to process sequences

  Language:R8518

• dmbala/AI4Fold_Tutorials

  Language:Shell2100

• SchlossLab/Hagan_CodeClub_PLOSComp

  Repository for collaboratively written 10 Simple Rules to Code Clubs paper

  Language:TeX243

• UNR-CFB/lahontan

  Lahontan: a flexible, multiscale RNA-seq pipeline

  Language:Python2

• adknudson/r-anomia

  Give your code blocks a name

  Language:R1201

• Nevada-Bioinformatics-Center/snakemake_rnaseq_combined_workflow

  Snakemake workflow that runs trimmomatic for trimming, and STAR and/or HISAT2 for aligning.

  Language:Python1

• NevadaINBRE/workhop-r-series

  R workshops for novices and advanced beginners

  Language:R10