lukfor
Hello, I’m Lukas Forer, a researcher and software developer living in Austria. I love building scientific applications that are efficient and beautiful.
Genetic Epidemiology, Innsbruck Medical UniversityInnsbruck, Austria
Pinned Repositories
nf-test
Simple test framework for Nextflow pipelines
cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
imputationserver
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
imputationbot
Automate interactions with the imputation servers :robot:
magic-progress
A java library for simple progress monitoring on the console
magic-tables
Simple java API to read, transform, sort, filter and aggregate tables.
pedviz
PedVizApi is a Java Api for the visual analysis of large and complex pedigrees. It provides all the necessary functionality for the interactive exploration of extended genealogies. Available packages are mostly focused on a static representation or cannot be added to an existing application; the goal of this open-source library is to provide an application program interface that enables the efficient construction of visual analytic applications for the analysis of family based data.
pgs-calc
Applying polygenic scores (PGS) on imputed genotypes
pgs-calc-nf
Nextflow pipeline to calculate polygenetic riskscores using pgs-calc
quarto-eisvogel
A Quarto Extension for the wonderful Eisvogel template https://github.com/Wandmalfarbe/pandoc-latex-template
lukfor's Repositories
lukfor/pgs-calc
Applying polygenic scores (PGS) on imputed genotypes
lukfor/magic-progress
A java library for simple progress monitoring on the console
lukfor/imputationbot
Automate interactions with the imputation servers :robot:
lukfor/pgs-calc-nf
Nextflow pipeline to calculate polygenetic riskscores using pgs-calc
lukfor/quarto-eisvogel
A Quarto Extension for the wonderful Eisvogel template https://github.com/Wandmalfarbe/pandoc-latex-template
lukfor/genepi-annotate
Annotate snp list with amino acids.
lukfor/imputationserver-ashg19
Website for ASHG19 Workshop
lukfor/magic-reports
A DSL to generate beautiful html reports
lukfor/magic-tables
Simple java API to read, transform, sort, filter and aggregate tables.
lukfor/cg-fetchngs
Cloudgene Application for nf-core/fetchngs
lukfor/cg-taxprofiler
Cloudgene Application for nf-core/taxprofiler
lukfor/conan
conan
lukfor/dotfiles
My dotfiles
lukfor/EPACTS
lukfor/flurnamenatlas
lukfor/genofinder
lukfor/gwas-report
Create html reports from GWAS summary statistics
lukfor/haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
lukfor/hello-cloudgene
HelloWorld Application for Cloudgene
lukfor/imputationserver-ashg20
lukfor/lukfor.github.io
forer.it website using jekyll
lukfor/micronaut-multipart-issue
lukfor/nft-compress
nf-test plugin to provide support for ZIP files.
lukfor/nft-csv
nf-test plugin to provide support for CSV files.
lukfor/nft-utils
nf-test utility functions
lukfor/nft-vcf
nf-test plugin to provide support for VCF files.
lukfor/OSSRH-59886
OSSRH-59886
lukfor/pgs-repository-builder
This repository is a collection of Nextflow pipelines to create PGS repositories for PGS-Server or pgs-calc.
lukfor/pipeline-umi-amplicon
Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
lukfor/rsq-browser
A web-application to search and compare imputation qualities among different populations, genotyping arrays and reference panels.